socube 1.1

A simple python package for doublet detection in scRNA-seq data

SoCube

Introduction

SoCube is an end-to-end doublet detection tool with novel feature embedding strategy. User manual is published on this repo's github page.

Installment

You can just install socube by executing pip command.

pip install socube

For install detail, please see at user manual.

Usage

The basic usage of socube with gpus is as follows.

socube -i data/pbmc-1C-dm.h5ad --gpu-ids 0

Please visit our user manual for usage detail.

Help

Any problem, you could create an issue, we will receive an email sent by github and reply it as soon as possible.