sortscore 0.1.0b2

A modular Python package for Sort-seq variant analysis

sortscore

sortscore is a Python package for Sort-seq variant analysis, including scoring, normalization, and visualization.

Quick Start

git clone https://github.com/dbaldridge-lab/sortscore
cd sortscore
python -m venv .venv
source .venv/bin/activate
pip install -e .

Run a standard variant scoring analysis:

sortscore -n EXPERIMENT_NAME -e path/to/experiment_setup.csv -c path/to/config.json

If you did not install the CLI entry point, run:

python -m sortscore -n EXPERIMENT_NAME -e path/to/experiment_setup.csv -c path/to/config.json

Documentation

• Installation
• Usage
• CLI Arguments
• Visualization
• Batch Processing
• Troubleshooting
• Contributing

Demo

• Single Experiment Scoring Notebook Demo
• Batch Normalization Notebook Demo
• Example Config
• Example Experiment Setup