sparg

   sparg    s parg    sparg    s parg   sparg 
  spa  rg   sp   ar  sp   ar   spa     sp   ar
  spa       gs   pa  gs   pa   rg      gs   pa
    rgsp    rgspar   rg   sp   sp      rg   sp
      arg   gs       ar   gs   ar       argspa
  sp  arg   pa       pa   rg   gs           rg
   sparg    rg        spar g  parg      sparg

Estimating dispersal rates and locating genetic ancestors with genome-wide genealogies

This is the software. For the paper, see https://github.com/mmosmond/sparg-ms.

Installation

Using python3 you can install from PyPi from the command line

pip install sparg

See tutorial/tutorial.ipynb for a demo on how to use.

Acknowledgements

Some code for importance sampling adapted from https://github.com/35ajstern/palm. Logo inspired by concrete poetry of bpNichol.

Metadata

Release files for sparg 1.0.1

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for sparg 1.0.1
File	Size	Uploaded	Provenance	Actions
sparg-1.0.1.tar.gz	28.8 kB	Jul 29, 2021	Without provenance	Details for sparg-1.0.1.tar.gz

Built distribution (wheel)

Table of built distributions (wheels) for sparg 1.0.1
File	Interpreter	ABI	Platform	Actions Reset
sparg-1.0.1-py3-none-any.whl 31.7 kB Jul 29, 2021 Without provenance	Python 3	none	any	Details for sparg-1.0.1-py3-none-any.whl

Total release size: 60.5 kB

Release files / sparg-1.0.1.tar.gz

Download URL	sparg-1.0.1.tar.gz
Size	28.8 kB
Tags	Source
SHA-256 checksum How to use checksums	`c8d479a7cd9836c0f0060715c6f9923f070c3da8cb1f0eb3d2cc5361ca0d7f7c`
BLAKE2b-256 checksum How to use checksums	`e1f5b379c2121cab4929025f9d2222f89a25005e1dab0b6bcbb129b6f3a2e603`
Upload date	Jul 29, 2021
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/3.4.2 importlib_metadata/4.6.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.61.2 CPython/3.8.5`

Release files / sparg-1.0.1-py3-none-any.whl

Download URL	sparg-1.0.1-py3-none-any.whl
Size	31.7 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`8b66815ebe079f7640cafaa6bc9235aa4cd2b0f15304c585149bd4f85be4d67d`
BLAKE2b-256 checksum How to use checksums	`884dbf9ad6b89a58d418a518e5aad534b3caa1e133eaed2f2ba2ddb36c8cfd3f`
Upload date	Jul 29, 2021
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/3.4.2 importlib_metadata/4.6.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.61.2 CPython/3.8.5`

Security for sparg 1.0.1

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1.0.1 This release

Jul 29, 2021 2 release files No provenance

1.0.0