spatial-memory-mcp 1.11.4

Spatial bidirectional persistent memory MCP server for LLMs - vector-based semantic memory as a navigable landscape

Spatial Memory MCP Server

A persistent semantic memory system for LLMs via the Model Context Protocol that treats knowledge as a navigable landscape, not a filing cabinet.

Version 1.11.3 — Production-ready with 2,500+ tests across Windows, macOS, and Linux.

Your AI assistant forgets everything between sessions. Spatial Memory fixes that. It gives Claude Code, Cursor, and any MCP client a persistent brain — memories that fade when stale, sharpen with use, and organize themselves into a navigable knowledge graph. Install in one command, capture knowledge automatically, and let your AI build on what it learned yesterday.

Why Spatial Memory?

Most memory servers store and retrieve. Spatial Memory thinks about your knowledge.

Memories That Fade Like Yours Do

Other memory tools treat every piece of information as equally important forever. Spatial Memory applies time-based decay — old, unused memories gradually lose importance while frequently accessed knowledge stays sharp. The result: your AI assistant surfaces what's relevant now, not what was relevant six months ago. Decay is automatic and configurable — adjust half-life, decay curves (exponential, linear, step), and minimum importance floors. Memories accessed frequently decay slower, just like human recall.

Why this approach? The cognitive memory model is inspired by established research:

• Ebbinghaus, H. (1885) — Memory: A Contribution to Experimental Psychology. The foundational research on the forgetting curve showing how memory retention decays exponentially over time. Our exponential decay function directly models this curve.
• Settles, B. & Meeder, B. (2016) — A Trainable Spaced Repetition Model for Language Learning. Duolingo's half-life regression (HLR) algorithm for optimizing memory retention. Our configurable half-life and access-count weighting draw from this work.
• FSRS Algorithm — Free Spaced Repetition Scheduler. A modern open-source algorithm for optimizing review intervals based on memory research. Informed our adaptive decay that slows for frequently accessed memories.

Zero-Effort Memory Capture

You shouldn't have to stop coding to tell your AI "remember this." With cognitive offloading, hook scripts run silently in the background and capture decisions, bug fixes, error root causes, and architecture choices as they happen — no manual remember calls needed.

• PostToolUse — captures insights after each tool call
• PreCompact — saves knowledge before context window compaction would erase it
• Stop — grabs remaining valuable context at session end

Content is classified into tiers (auto-save, ask-first, skip) and secrets are automatically redacted before storage.

Navigate and Search Like No Other Memory Server

Traditional memory is a search box. Spatial Memory is a map with a search engine. You get hybrid search — combined vector similarity and keyword matching with a tunable alpha — plus spatial tools that let you explore the space between and around your memories:

Tool	What It Does
hybrid_recall	Combined vector + keyword search with tunable balance (alpha 0.0-1.0) — find memories that match both meaning and specific terms
journey	Walk the conceptual path between two memories using SLERP interpolation — discover what lies in between "authentication" and "performance"
wander	Take a temperature-controlled random walk — stumble into unexpected connections you'd never think to search for
regions	See how your knowledge self-organizes into clusters via HDBSCAN — find the natural shape of what you know
visualize	Project your memory space into 2D/3D via UMAP — render as JSON, Mermaid diagrams, or SVG

Fast and Lightweight Embeddings

No GPU. No heavy model downloads. Spatial Memory defaults to all-MiniLM-L6-v2 — an ~80MB model trained on over 1 billion sentence pairs that maps text to 384-dimensional vectors, accelerated by ONNX Runtime for 2-3x faster inference over the default PyTorch backend — all on CPU alone.

• ONNX Runtime auto-detected at startup — no configuration needed
• CPU-only — no CUDA, no GPU drivers, works everywhere Python runs

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How Is This Different?

Most MCP memory servers are vector stores with semantic recall — store text, search by similarity, retrieve results. Spatial Memory starts there but adds what they don't: time-based decay that fades stale knowledge automatically, cognitive offloading hooks that capture decisions and errors without manual calls, spatial navigation (SLERP interpolation, random walks, HDBSCAN clustering) for exploring the space between memories, and hybrid search that combines vector similarity with keyword matching. If you need a simple key-value memory, any of those will work. If you want memory that behaves more like human recall — fading, reinforcing, and organizing itself — this is the one.

Quick Start

Claude Code (Recommended)

Option A — Plugin (zero-config):

claude plugin marketplace add arman-tech/spatial-memory-mcp
claude plugin install spatial-memory@spatial-memory-marketplace

This installs the plugin globally (user scope) — available across all your projects. To install for the current project only:

cd /path/to/your/project
claude plugin install spatial-memory@spatial-memory-marketplace --scope project

That's it. The plugin registers 3 hooks (PostToolUse, PreCompact, Stop), starts the MCP server, and begins capturing knowledge automatically as you work.

Option B — Manual MCP config:

Add to your Claude Code settings (~/.claude/settings.json or project .claude/settings.json):

{
  "mcpServers": {
    "spatial-memory": {
      "command": "uvx",
      "args": ["--from", "spatial-memory-mcp", "spatial-memory", "serve"],
      "env": {
        "SPATIAL_MEMORY_COGNITIVE_OFFLOADING_ENABLED": "true"
      }
    }
  }
}

No pip install needed — uvx fetches the package from PyPI automatically.

Cursor

From your project root, one command writes .cursor/mcp.json, .cursor/hooks.json, and .cursor/rules/spatial-memory.mdc:

pip install spatial-memory-mcp
cd /path/to/your/project
spatial-memory init --client cursor

Claude Desktop / Other MCP Clients

Add to your MCP client config (e.g., claude_desktop_config.json):

{
  "mcpServers": {
    "spatial-memory": {
      "command": "uvx",
      "args": ["--from", "spatial-memory-mcp", "spatial-memory", "serve"],
      "env": {
        "SPATIAL_MEMORY_COGNITIVE_OFFLOADING_ENABLED": "true"
      }
    }
  }
}

No pip install needed — uvx fetches the package from PyPI automatically.

Client	Install	Hooks	Notes
Claude Code	Plugin or pip	Native (auto)	Full auto-capture via plugin or manual settings
Cursor	pip + init	Native (auto)	One-command setup via spatial-memory init --client cursor
Claude Desktop	pip	Manual	Add MCP config, hooks require manual setup
Other MCP clients	pip	Manual	Any client that speaks MCP works

How It Works

Cognitive Offloading (Auto-Capture)

Three hooks (PostToolUse, PreCompact, Stop) run silently in the background to capture knowledge as you work — see Why Spatial Memory? for the full description. Captured content is classified into tiers:

Tier	Behavior	What's Captured
1	Auto-save	Decisions, bug fixes, error root causes, architecture choices
2	Ask first	Patterns, preferences, configuration discoveries, workarounds
3	Skip	Trivial observations, duplicates, speculative information

Secrets (API keys, tokens, passwords) are automatically redacted before storage.

25 MCP Tools

Category	Tools
Core	remember, remember_batch, recall, nearby, forget, forget_batch
Spatial	journey, wander, regions, visualize
Lifecycle	decay, reinforce, extract, consolidate
Utility	stats, namespaces, delete_namespace, rename_namespace, export_memories, import_memories, hybrid_recall, health
Cross-corpus	discover_connections, corpus_bridges
Setup	setup_hooks

See docs/API.md for complete parameter and return type documentation.

Configuration

Settings via environment variables or .env file. Key options:

Variable	Default	Description
SPATIAL_MEMORY_MEMORY_PATH	./.spatial-memory	LanceDB storage directory
SPATIAL_MEMORY_EMBEDDING_MODEL	all-MiniLM-L6-v2	Embedding model (or openai:text-embedding-3-small)
SPATIAL_MEMORY_EMBEDDING_BACKEND	auto	auto (ONNX if available), onnx, or pytorch
SPATIAL_MEMORY_OPENAI_API_KEY	—	Required only for OpenAI embeddings
SPATIAL_MEMORY_COGNITIVE_OFFLOADING_ENABLED	false	Enable queue-based auto-capture pipeline
SPATIAL_MEMORY_AUTO_DECAY_ENABLED	true	Automatic importance decay over time
SPATIAL_MEMORY_LOG_LEVEL	INFO	Logging verbosity

See docs/CONFIGURATION.md for the full reference including auto-decay tuning, rate limiting, and connection pool settings.

CLI Commands

# Server
spatial-memory serve                     # Start the MCP server (default)

# Setup
spatial-memory init --client cursor      # Auto-configure Cursor (writes 3 files)
spatial-memory setup-hooks --client X    # Generate hook config for Claude Code or Cursor

# Database maintenance
spatial-memory namespaces                # List all namespaces with memory counts
spatial-memory consolidate <namespace>   # Merge duplicate memories (dry run by default)
spatial-memory consolidate <ns> --no-dry-run  # Actually apply merges
spatial-memory migrate --status          # Check database migration status

# Utilities
spatial-memory hook <event> --client X   # Run a hook event (used by hook configs)
spatial-memory instructions              # View auto-injected MCP instructions
spatial-memory --version                 # Show version

Security

• Path traversal prevention on all file operations
• SQL injection detection (13 patterns)
• Secret redaction in cognitive offloading (AWS, GitHub, Stripe, OpenAI, SSH keys, JWTs, etc.)
• Input validation via Pydantic models on all tool inputs
• Error sanitization — internal errors return reference IDs, not stack traces
• Secure credentials — API keys stored as SecretStr

Development

# Install from source
git clone https://github.com/arman-tech/spatial-memory-mcp.git
cd spatial-memory-mcp
pip install -e ".[dev]"

# Run tests
pytest tests/ -v              # Unit tests only
pytest tests/ -v -m ""        # All tests (unit + integration)

# Quality checks
ruff check spatial_memory/ tests/
ruff format --check spatial_memory/ tests/
mypy spatial_memory/

Architecture

Clean Architecture with ports/adapters pattern:

graph TD
    Client["MCP Clients<br>Claude Code · Cursor"] --> Server["MCP Server<br>server.py · 25 tools"]
    Hooks["Hook Dispatcher<br>PostToolUse · PreCompact · Stop"] -.->|file queue| Server
    Server --> Services["Services<br>Memory · Spatial · Lifecycle · Utility"]
    Services --> DB["Database Facade<br>database.py · 8 managers"]
    Services --> Emb["Embeddings<br>embeddings.py"]
    DB --> Lance["LanceDB"]
    Emb --> ST["sentence-transformers<br>ONNX Runtime"]

spatial_memory/
├── server.py       # MCP server + tool handlers
├── factory.py      # Dependency injection container
├── config.py       # Pydantic settings
├── core/           # Database, embeddings, models, validation, security
├── services/       # Business logic (memory, spatial, lifecycle, utility)
├── adapters/       # LanceDB repository, project detection, git utils
├── ports/          # Protocol interfaces
├── hooks/          # Cognitive offloading dispatcher + pipeline
├── tools/          # MCP tool definitions + setup_hooks generator
└── migrations/     # Database schema migrations

See SPATIAL-MEMORY-ARCHITECTURE-DIAGRAMS.md for visual documentation.

Documentation

Document	Description
docs/API.md	Complete API reference for all 25 tools
docs/CONFIGURATION.md	Full configuration reference
docs/GETTING_STARTED.md	Step-by-step tutorial
docs/TECHNICAL_HIGHLIGHTS.md	Algorithm deep-dives (SLERP, HDBSCAN, UMAP)
docs/BENCHMARKS.md	Performance benchmarks
docs/troubleshooting.md	Common issues and solutions

Supported Platforms

• Windows 11, macOS (latest), Linux (Fedora, Ubuntu, Linux Mint)
• Python 3.10+
• CI tested across 3 OS x 4 Python versions

Contributing

1. Fork the repository
2. Create a feature branch
3. Add tests for new functionality
4. Ensure all tests pass (pytest tests/ -v -m "")
5. Submit a pull request

For contributors using AI assistants, see CLAUDE.md for project-specific guidance.

License

MIT — See LICENSE