spatial-rx
Tools for exploring spatial omics data in notebooks — reactive widgets that stay in sync with your Python analysis.
| Tool | Role | Demo |
|---|---|---|
| LandmarksWidget | Draw selections and landmarks on tissue coordinates; measure from the notebook |  |
| GalleryWidget | Compact card gallery (e.g. analysis recipes / use cases) | |
More widgets and helpers may land here over time.
Install
pip install spatial-rx
From source:
uv sync --extra demo --group dev
LandmarksWidget
Draw selections and landmarks on tissue coordinates (lasso, rectangle, ellipse; point,
line, spline, shape). Format data as AnnData with obsm["spatial"] and squidpy
neighbor graphs, then LandmarksWidget(adata, color=..., genes=...). Persist
hits with get_obs_names.
GalleryWidget
Selectable image cards for recipes or use cases. Synced selection is selected_index.
1 maintainer
Metadata
1 maintainer
Release files for spatial-rx 1.0.0
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Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| spatial_rx-1.0.0.tar.gz | 10.9 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| spatial_rx-1.0.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 11.7 MB
Release files / spatial_rx-1.0.0.tar.gz
| Download URL | spatial_rx-1.0.0.tar.gz |
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| Size | 10.9 MB |
| Tags | Source |
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Release files / spatial_rx-1.0.0-py3-none-any.whl
| Download URL | spatial_rx-1.0.0-py3-none-any.whl |
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| Size | 843.9 kB |
| Tags | Python 3 |
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