spatial analysis toolkit for single-cell multiplexed tissue data
Reason this release was yanked:
Change versioning convention
Project description
SpatialTis
SpatialTis is a spatial analysis toolkit for single-cell multiplexed tissue data using AnnData object as input. Multiprocessing is supported for most analysis functions.
Note: This package is still in development, API may change in the future.
Documentation:
Tutorial:
Installation
Pypi
pip install spatialtis
Install the current development version
pip install git+https://github.com/Mr-Milk/SpatialTis.git
SpatialTis modules
- Preprocessing
- Data statistic
- Cell components
- Cell density
- Cell morphology
- Cell co-occurrence
- Find cell neighbors
- Spatial analysis
- Spatial distribution
- Spatial heterogeneity
- Hotspot detection
- Neighborhood analysis
- Spatial community detection
- Marker influence by neighbor cell/marker
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