SP-Fluo
This repository contains code for picking and single particle reconstruction in fluorescence imaging.
Pipeline :
- picking
- for centrioles only : cleaning with segmentation and alignement
- reconstruction ab-initio
- refinement
Installation
git clone https://github.com/jplumail/spfluo
cd spfluo
pip install .
Run tests
To test for python 3.9, 3.10 and 3.11:
hatch test spfluo
For python 3.8:
hatch env run -e hatch-test-38 pytest -- spfluo
1 maintainer
Metadata
1 maintainer
Release files for spfluo 0.1.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| spfluo-0.1.0.tar.gz | 6.2 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| spfluo-0.1.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 12.4 MB
Release files / spfluo-0.1.0.tar.gz
| Download URL | spfluo-0.1.0.tar.gz |
|---|---|
| Size | 6.2 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Yes |
| Uploaded via |
uv/0.5.4
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Release files / spfluo-0.1.0-py3-none-any.whl
| Download URL | spfluo-0.1.0-py3-none-any.whl |
|---|---|
| Size | 6.2 MB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
uv/0.5.4
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