SPFluo package
Project description
SP-Fluo
This repository contains code for picking and single particle reconstruction in fluorescence imaging.
Pipeline :
- picking
- for centrioles only : cleaning with segmentation and alignement
- reconstruction ab-initio
- refinement
Installation
git clone https://github.com/jplumail/spfluo
cd spfluo
pip install .
Run tests
To test for python 3.9, 3.10 and 3.11:
hatch test spfluo
For python 3.8:
hatch env run -e hatch-test-38 pytest -- spfluo
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
spfluo-0.0.9rc5.tar.gz
(6.2 MB
view details)
Built Distribution
File details
Details for the file spfluo-0.0.9rc5.tar.gz.
File metadata
- Download URL: spfluo-0.0.9rc5.tar.gz
- Upload date:
- Size: 6.2 MB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: uv/0.4.18
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 400af0e869e1e79f2cd6722ffb1e74b4e48b7ebe80f459acb5e2101ef73a7cd7 |
|
| MD5 | 65cf2f7434b3488cb405da0b27980481 |
|
| BLAKE2b-256 | 56c7b08bca85f1ddeef5b03ec1629f387e9c4abd40f20140fa3887909a4b9bfc |
File details
Details for the file spfluo-0.0.9rc5-py3-none-any.whl.
File metadata
- Download URL: spfluo-0.0.9rc5-py3-none-any.whl
- Upload date:
- Size: 6.2 MB
- Tags: Python 3
- Uploaded using Trusted Publishing? Yes
- Uploaded via: uv/0.4.18
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 2487b2850b69be0e54706c97d99a63d28002f188f94b299010a92976266c4dcb |
|
| MD5 | c26419abb6cc6505f4b8ee836f467d62 |
|
| BLAKE2b-256 | cfcf3c0363399abc90bcab72c5d2f3efa3e357865b88578eea15a909a562b744 |
