Sparse linear operators and solvers for Lineax
Project description
splineax
Sparse linear operators and direct solvers for Lineax.
splineax lets you keep a linear system in its native sparse storage
(jax.experimental.sparse.BCOO / BCSR) and solve it with a sparse direct solver that
plugs straight into lineax.linear_solve. It also interfaces with asdex for calculating sparse Jacobians and using them as operators.
- Operators:
BCOOLinearOperator,BCSRLinearOperator,SparseJacobianLinearOperator. - Solvers:
Spsolve(any backend),KLU(CPU-only, SuiteSparse, factorization reuse), andAutoSparseLinearSolver(picks one based on the platform). - A
SparseLinearSolverprotocol for separating factorization from solving.
Installation
pip install git+https://github.com/nardi/splineax.git@v0.1.1
Example
Solve a 10000 x 10000 system. As a dense matrix it would need 10^8 entries, but kept sparse it has only ~3 x 10^4 nonzeros, and the solver never materialises the dense form.
import jax.numpy as jnp
import lineax as lx
import numpy as np
from jax.experimental.sparse import BCOO
import splineax
n = 10000
np.random.seed(0)
# A large, randomly sparse matrix with a heavy diagonal (so it is invertible).
diagonal_indices = np.stack([np.arange(n), np.arange(n)], axis=1)
off_diagonal_indices = np.unique(np.random.randint(0, n, size=(2 * n, 2)), axis=0)
indices = jnp.concatenate([diagonal_indices, off_diagonal_indices])
values = jnp.concatenate(
[
np.full(n, float(n)),
np.random.uniform(low=-1, high=1, size=off_diagonal_indices.shape[0]),
]
)
matrix = BCOO((values, indices), shape=(n, n)).sum_duplicates()
operator = splineax.BCOOLinearOperator(matrix)
vectors = [jnp.ones(n), jnp.arange(n) % 2]
solver = splineax.AutoSparseLinearSolver()
# Calculate factorization once...
with solver.factorize(operator) as factorized_state:
# ...and reuse for multiple solves.
solution = lx.linear_solve(
operator, vectors[0], solver=solver, state=factorized_state
)
assert jnp.allclose(matrix @ solution.value, vectors[0], atol=1e-4)
solution = lx.linear_solve(
operator, vectors[1], solver=solver, state=factorized_state
)
assert jnp.allclose(matrix @ solution.value, vectors[1], atol=1e-4)
Documentation
Build the docs locally with uv run mkdocs serve, or view the user guide and API reference here.
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