Spatial Isoform Finder detects spatially variable isoforms in long-read spatial data
Project description
Spatial Isoform Finder (Spl-IsoFind)
Spl-IsoFind can be used to detect spatially variable isoforms in long-read spatial transcriptomics data.
Installation
SplIsoFind requires Python 3.9 or higher. The easiest way to install is through the following command:
pip install SplIsoFind
Tutorials
The tutorial folder contains notebooks to run Spl-IsoFind on demo data. See the documentation for more information. The demo datasets can be downloaded here:
For citation and further information please refer to our preprint
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