Splicing-regulatory Driver Genes Identification Tool
Project description
SpReD-GIT
Splicing-regulatory Driver Genes Identification Tool
This project describes a tool to identify the splicing-regulatory driver genes based on isoform-level expressions quanlification such as XAEM, RSEM
Prerequisites
Python (recommended version >= 3.7)
Installation
conda create -n SpReD python==3.8
conda activate SpReD
Step 1: Setup tools
git clone https://github.com/ZhengCQ/SpReD.git
cd SpReD
pip install -e ./
Input files
matrix
group
Quick start
spred run-all -m matrix.count.input.tsv -e group.tsv -g Group_name -c1 Case_name -c2 Control_name -o outdir_name --species human
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
spred-0.1.0.tar.gz
(4.7 MB
view details)
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
spred-0.1.0-py3-none-any.whl
(4.7 MB
view details)
File details
Details for the file spred-0.1.0.tar.gz.
File metadata
- Download URL: spred-0.1.0.tar.gz
- Upload date:
- Size: 4.7 MB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.8.0
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
56f288673c164133df490ec5c491f23cdae3e39484a6edc3e54405f2f7399fbc
|
|
| MD5 |
ac3f37f84ffca538ba76eb65f7ff2b48
|
|
| BLAKE2b-256 |
a9eaaafd8f9f41164ffda8acb887335af7184a988901ab7c3ded81278a5c3837
|
File details
Details for the file spred-0.1.0-py3-none-any.whl.
File metadata
- Download URL: spred-0.1.0-py3-none-any.whl
- Upload date:
- Size: 4.7 MB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.8.0
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
51f0598c58915a6682328a76482df0e687b1fceed496a389aeb79b95447bbce6
|
|
| MD5 |
933d482bc85aec014f88e291bfdcea6b
|
|
| BLAKE2b-256 |
03464c94d09ace61d4ad708c7ce6b299822702353571a39a3b59ffefa4bb9081
|
