Skip to main content

Fast spike sorting by template matching

Project description

SpyKING CIRCUS logo

A fast and scalable solution for spike sorting of large-scale extracellular recordings

SpyKING CIRCUS is a python code to allow fast spike sorting on multi channel recordings. A publication on the algorithm can be found at https://elifesciences.org/articles/34518 It has been tested on datasets coming from in vitro retina with 252 electrodes MEA, from in vivo hippocampus with tetrodes, in vivo and in vitro cortex data with 30 and up to 4225 channels, with good results. Synthetic tests on these data show that cells firing at more than 0.5Hz can be detected, and their spikes recovered with error rates at around 1%, even resolving overlapping spikes and synchronous firing. It seems to be compatible with optogenetic stimulation, based on experimental data obtained in the retina.

SpyKING CIRCUS is currently still under development. Please do not hesitate to report issues with the issue tracker

copyright:Copyright 2006-2020 by the SpyKING CIRCUS team, see AUTHORS.
license:CeCILL, see LICENSE for details.
https://anaconda.org/spyking-circus/spyking-circus/badges/version.svg https://badge.fury.io/py/spyking-circus.svg https://img.shields.io/badge/docs-latest-brightgreen.svg?style=flat https://github.com/spyking-circus/spyking-circus/workflows/Tests%20on%20Linux/badge.svg https://github.com/spyking-circus/spyking-circus/workflows/Tests%20on%20OS%20X/badge.svg https://github.com/spyking-circus/spyking-circus/workflows/Tests%20on%20Windows/badge.svg

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

spyking-circus-1.1.0.tar.gz (509.3 kB view hashes)

Uploaded source

Built Distribution

spyking_circus-1.1.0-py3-none-any.whl (544.4 kB view hashes)

Uploaded py3

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page