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Fast spike sorting by template matching

Project Description

A fast and scalable solution for spike sorting of large-scale extracellular recordings

SpyKING CIRCUS is a python code to allow fast spike sorting on multi channel recordings. A preprint with the details of the algorithm can be found on BioRxiv at http://biorxiv.org/content/early/2016/08/04/067843. It has been tested on datasets coming from in vitro retina with 252 electrodes MEA, from in vivo hippocampus with tetrodes, in vivo and in vitro cortex data with 30 and up to 4225 channels, with good results. Synthetic tests on these data show that cells firing at more than 0.5Hz can be detected, and their spikes recovered with error rates at around 1%, even resolving overlapping spikes and synchronous firing. It seems to be compatible with optogenetic stimulation, based on experimental data obtained in the retina.

SpyKING CIRCUS is currently still under development. Please do not hesitate to report issues with the issue tracker

copyright:Copyright 2006-2016 by the SpyKING CIRCUS team, see AUTHORS.
license:CeCILL, see LICENSE for details.

Release History

This version
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0.6.3

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0.6.2

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0.6.1

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0.6.0

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0.5.9

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0.5.8

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0.5.7

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0.5.6

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0.5.5

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0.5.4

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0.5.2

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0.5.1

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0.5rc0

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0.5b9

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0.5b8

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0.5b7

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0.5b6

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0.5b3

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0.5b1

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0.4.3

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0.4.2

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0.4.1

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0.4

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Filename, Size & Hash SHA256 Hash Help File Type Python Version Upload Date
spyking_circus-0.6.3-py2-none-any.whl
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Wheel py2 Jan 18, 2018
spyking_circus-0.6.3-py3-none-any.whl
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Wheel py3 Jan 18, 2018
spyking-circus-0.6.3.tar.bz2
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Source None Jan 18, 2018

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