DNA Sequence Visualization for Humans.
Project description
Squiggle
Squiggle is a two-dimensional DNA sequence visualization library that can turn this:
>lcl|NC_000011.10_cds_NP_000509.1_1 [gene=HBB]
ATGGTGCATCTGACTCCTGAGGAGAAGTCTGCCGTTACTGCCCTGTGGGGCAAGGTGAACGTGGATGAAG
TTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTGGTCTACCCTTGGACCCAGAGGTTCTTTGAGTCCTTTGG
GGATCTGTCCACTCCTGATGCTGTTATGGGCAACCCTAAGGTGAAGGCTCATGGCAAGAAAGTGCTCGGT
GCCTTTAGTGATGGCCTGGCTCACCTGGACAACCTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACT
GTGACAAGCTGCACGTGGATCCTGAGAACTTCAGGCTCCTGGGCAACGTGCTGGTCTGTGTGCTGGCCCA
TCACTTTGGCAAAGAATTCACCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGGTGTGGCTAAT
GCCCTGGCCCACAAGTATCACTAA
into this:
Installation
Installation is as simple as:
$ pip install squiggle
Or alternatively, if you want to get the latest development version:
$ pip install git+https://github.com/Lab41/squiggle.git
Usage
Using squiggle is as easy as:
$ squiggle your_sequence.fasta
Squiggle has tons of options available to make beautiful, interactive visualizations of sequences. The full documentation is available here.
Citation
To be determined.
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