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Python bindings for the sqzc3d C/C++ library.

Project description

squeezc3d — sqzc3d

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squeezc3d, aka sqzc3d, is a high-performance C3D loading library focused on fast chunk materialization and predictable array semantics.

  • Chunk-first: contiguous (T, P, 3) points + explicit valid masks.
  • Clear selector/index-space contracts (labels, type-groups).
  • Optional modes: streaming reads and .sqzc3d bundles for cached/low-memory workflows.

Quick summary:

  • Want arrays for analysis/simulation: pip install sqzc3d then sqzc3d.read("trial.c3d").
  • Want confidence before switching from ezc3d: read docs/en/user_guide_correctness_compatibility.md and run python samples/verify/verify.py stress.

Links:

Install — Python

pip install sqzc3d

Quickstart — Python Easy

import sqzc3d as sq

v = sq.read("trial.c3d")  # default: points=ALL, analogs=ALL
print(v.meta["n_frames"], v.meta["n_points"], v.meta["n_analogs"])

pts = v.points              # (T, P, 3) float64
pts_valid = v.points_valid  # (T, P) uint8

# By label (single marker / channel)
ank = v.point["LANK"]              # (T, 3)
ank_valid = v.point_valid["LANK"]  # (T,)

emg1 = v.analog["EMG1"]              # (N,)
emg1_valid = v.analog_valid["EMG1"]  # (N,)

Quickstart — C

#include "sqzc3d.h"

#include <stdio.h>

int main(int argc, char** argv) {
  const char* path = argv[1];  // assumes argv[1] is a valid path

  sqzc3d_dec_t* dec = NULL;
  if (sqzc3d_open_file(&dec, path, NULL) != sqzc3d_STATUS_SUCCESS) return 1;

  sqzc3d_build_opt_t opt;
  sqzc3d_default_build_opt(&opt);

  sqzc3d_chunk_t* chunk = NULL;
  if (sqzc3d_build_chunks(dec, &opt, &chunk) != sqzc3d_STATUS_SUCCESS) {
    (void)sqzc3d_close_dec(dec);
    return 2;
  }

  printf("frames=%d points=%d\\n", chunk->n_frames, chunk->n_points);
  printf("first x=%f\\n", (double)chunk->points_xyz[0]);

  (void)sqzc3d_free_chunk(chunk);
  (void)sqzc3d_close_dec(dec);
  return 0;
}

Benchmark summary — materialize

speedup_x = ezc3d / sqzc3d (higher is better for sqzc3d).

Case Language load_ms speedup_x peak_rss_mb speedup_x
PFERD (117.96 MB) C++ 11.4x 5.5x
PFERD (117.96 MB) Python 14.8x 6.6x
DOG (4.23 MB) C++ 9.0x 3.5x
DOG (4.23 MB) Python 13.0x 2.9x

Full methodology and results: docs/en/benchmarks.md.

Acknowledgements

squeezc3d builds upon ezc3d for C3D parsing and parameter tree handling. Thanks to the ezc3d authors and the Pyomeca community.

Generative AI usage

Parts of this repository (code/tests/docs) were developed with the assistance of generative AI tools. All changes are reviewed by maintainers; please report issues if you spot inconsistencies.

License

squeezc3d (abbrev sqzc3d) is released under MIT. ezc3d upstream license is MIT.

License & third-party notices

See LICENSE and NOTICE for dependency/license notes, DEPENDENCIES.md for build requirements.

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