STAMPede - STAMP data Exploration and Differential Expression
Process & analyse STAMP data with ease!
STAMPede is built to handle huge datasets with shallow depth, using syntax familiar to scanpy users.
Table of Contents
Installation
Using conda
conda install -c conda-forge -c bioconda stampede
Using pip
Notes:
- the Pypi package name is
stampede-sc. After installation, the package is imported asstampede. - the Pypi installation requires HDF5.
pip install stampede-sc
Developer installation
Clone the repo
git clone https://github.com/mhlangalab/stampede.git
Change directory into the repo
cd stampede
Create a conda environment
conda env create -n stampede -f requirements.yaml
Activate the conda environment
conda activate stampede
Install the package
pip install -e .
Documentation
Check out our GitHub pages!
Usage
Follow along with the tutorial.ipynb!
Citation
If you used STAMPede in your work, please cite it.
1 maintainer
Metadata
1 maintainer
Release files for stampede-sc 0.3.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| stampede_sc-0.3.1.tar.gz | 26.9 MB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| stampede_sc-0.3.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 26.9 MB
Release files / stampede_sc-0.3.1.tar.gz
| Download URL | stampede_sc-0.3.1.tar.gz |
|---|---|
| Size | 26.9 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.12
|
Release files / stampede_sc-0.3.1-py3-none-any.whl
| Download URL | stampede_sc-0.3.1-py3-none-any.whl |
|---|---|
| Size | 46.5 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.12
|
Security for stampede-sc 0.3.1
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