statbelt 0.1.4

A strict experimental harness for reproducible, statistically valid model evaluation.

statbelt

statbelt is a strict experimental harness for reproducible, statistically aware model evaluation in Python.

Status: Alpha (APIs may evolve).
Supported Python: 3.11+.

Installation

Install from PyPI:

pip install statbelt

For local development:

uv sync --all-groups

Quick Start

from sklearn.datasets import load_breast_cancer
from sklearn.ensemble import RandomForestClassifier
from sklearn.linear_model import LogisticRegression
from sklearn.pipeline import make_pipeline
from sklearn.preprocessing import StandardScaler
from statbelt import ExperimentalHarness

dataset = load_breast_cancer()
X, y = dataset.data, dataset.target

report = (
    ExperimentalHarness()
    .data(X, y)
    .task("binary_classification")
    .compare(
        ("logreg", make_pipeline(StandardScaler(), LogisticRegression(max_iter=1000))),
        ("rf", RandomForestClassifier(n_estimators=100, random_state=21)),
    )
    .metrics("accuracy", "roc_auc", "log_loss")
    .design(cv=5, cv_repeats=2, random_state=42)
    .inference(alpha=0.05, bootstrap_resamples=2000)
    .compare_inference(method="paired_bootstrap", alternative="two-sided")
    .multiplicity(method="holm", family="global")
    .practical_significance(accuracy=0.005, roc_auc=0.002, log_loss=0.01)
    .baseline("logreg")
    .guardrails(min_improvement={"accuracy": 0.002}, confidence=0.95)
    .fasten("statbelt.lock.json")
    .evaluate()
)

print(report.summary())

Sample output:

Task: binary_classification
CV folds: 5
CV repeats: 2
Bootstrap resamples: 2000
Confidence interval: 95%

Model: logreg
  accuracy: 0.9754 (CI 0.9666, 0.9833)
  roc_auc: 0.9948 (CI 0.9913, 0.9976)
  log_loss: 0.0775 (CI 0.0603, 0.0975)

Model: rf
  accuracy: 0.9596 (CI 0.9526, 0.9666)
  roc_auc: 0.9903 (CI 0.9860, 0.9941)
  log_loss: 0.1478 (CI 0.1066, 0.2145)

Pairwise comparisons:
  logreg - rf [accuracy]: 0.0158 (CI 0.0070, 0.0255), p_adj=0.002999, reject, practical
  logreg - rf [roc_auc]: 0.0045 (CI 0.0002, 0.0098), p_adj=0.03898, reject, practical
  logreg - rf [log_loss]: -0.0703 (CI -0.1396, -0.0245), p_adj=0.002999, reject, practical

Guardrails: FAIL
  rf vs logreg [accuracy]: FAIL (min 0.0020, CI -0.0263, -0.0070)

When pairwise inference and guardrails are configured, summary() also includes pairwise comparison lines and an overall guardrail pass/fail section.

Multiclass Quick Start

from sklearn.datasets import load_iris
from sklearn.ensemble import RandomForestClassifier
from sklearn.linear_model import LogisticRegression
from statbelt import ExperimentalHarness

dataset = load_iris()
X, y = dataset.data, dataset.target

report = (
    ExperimentalHarness()
    .data(X, y)
    .task("multiclass_classification")
    .compare(
        ("logreg", LogisticRegression(max_iter=1000)),
        ("rf", RandomForestClassifier(n_estimators=200, random_state=42)),
    )
    .metrics(
        "accuracy",
        "precision",
        "recall",
        "f1",
        "roc_auc",
        "log_loss",
        "roc_auc_ovo_weighted",
    )
    .design(cv=5, random_state=42)
    .inference(alpha=0.05, bootstrap_resamples=1000)
    .fasten("statbelt.lock.json")
    .evaluate()
)

Core Features

• ExperimentalHarness builder-style API for binary and multiclass classification comparisons.
• Deterministic repeated stratified k-fold evaluation with shared folds across models.
• Bootstrap confidence intervals over fold-level metrics.
• Pairwise model inference with paired bootstrap/permutation p-values.
• Multiple-comparison correction (holm, bonferroni, fdr_bh).
• Practical-significance thresholds and baseline guardrail checks.
• Machine-readable exports via EvaluationReport.to_json() and .to_dataframe().
• Lock artifact output (statbelt.lock.json) with config and split indices.
• Strict staged workflow: configure -> fasten() -> evaluate().

Inference Configuration

Use pairwise inference to compare models directly:

.compare_inference(method="paired_bootstrap", alternative="two-sided")

Supported values:

• method: paired_bootstrap, permutation
• alternative: two-sided, greater, less

How to choose alternative:

• two-sided: use when you only care whether A and B differ.
• greater: use when your question is “is A better than B?”
• less: use when your question is “is A worse than B?”

How to choose method:

• paired_bootstrap: default practical choice for CI + p-value style comparison.
• permutation: exact paired-randomization style null test over fold deltas.

Interpretation details:

• Pairwise rows are always model_a vs model_b; A/B come from compare(...) order.
• delta in the report is raw metric-space model_a - model_b.
• One-sided p-values are metric-direction normalized, so greater/less keep the same meaning across mixed metrics (for example, both accuracy and log_loss).

Quick example:

report = (
    ExperimentalHarness()
    .data(X, y)
    .task("binary_classification")
    .compare(("candidate", candidate_model), ("baseline", baseline_model))
    .metrics("accuracy", "log_loss")
    .compare_inference(method="paired_bootstrap", alternative="greater")
    .fasten()
    .evaluate()
)
# Here, p-values answer: \"is candidate better than baseline?\"

Control multiple testing with:

.multiplicity(method="holm", family="global")

Supported values:

• method: holm, bonferroni, fdr_bh
• family: global, per_metric

Practical Significance and Guardrails

Practical thresholds:

.practical_significance(accuracy=0.005, log_loss=0.01)

Guardrails against a baseline:

.baseline("logreg")
.guardrails(min_improvement={"accuracy": 0.002}, confidence=0.95)

Rules:

• Threshold values must be finite and non-negative.
• Guardrails require baseline(...).
• Guardrail metrics must also be included in .metrics(...).

Report and Export API

evaluate() returns an EvaluationReport with:

• models: per-model metric intervals
• pairwise: pairwise deltas, CIs, raw/adjusted p-values, practical-significance flags
• guardrails: per-check pass/fail and aggregate overall_pass
• splits and split_metadata: deterministic split definitions

Export helpers:

report.to_json("report.json")
report.to_dataframe(kind="models")
report.to_dataframe(kind="pairwise")

Lockfile Schema

fasten() writes schema version 3 lockfiles, including:

• design: cv, cv_repeats, random_state
• inference config: alpha, bootstrap_resamples, pairwise_inference
• multiplicity config
• practical-significance and guardrail config
• split indices with repeat/fold metadata

Supported Task and Metrics

Supported tasks:

• binary_classification
• multiclass_classification

Binary metrics:

• accuracy
• precision
• recall
• f1
• roc_auc
• log_loss

Multiclass metrics:

• accuracy
• precision_macro, precision_weighted, precision_micro
• recall_macro, recall_weighted, recall_micro
• f1_macro, f1_weighted, f1_micro
• roc_auc_ovr_macro, roc_auc_ovr_weighted
• roc_auc_ovo_macro, roc_auc_ovo_weighted
• log_loss

Task-aware metric aliases:

Metric name	binary_classification	multiclass_classification
precision	binary precision	precision_macro
recall	binary recall	recall_macro
f1	binary F1	f1_macro
roc_auc	binary ROC AUC	roc_auc_ovr_macro

Validation is fail-fast. For example:

• log_loss requires predict_proba.
• binary roc_auc accepts predict_proba or decision_function.
• multiclass ROC AUC metrics require predict_proba.

Development

uv sync --all-groups
uv run ruff check .
uv run pytest

For release operations (tagging, TestPyPI gate, PyPI publish), see RELEASING.md.

Current Limits

• Classification tasks only (regression is not supported yet).

License

This project is licensed under the GNU Affero General Public License, version 3 or later (AGPL-3.0-or-later). See LICENSE.