stitchee 1.8.0

NetCDF4 Along-existing-dimension Concatenation Service

Overview

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STITCHEE (STITCH by Extending a dimEnsion) is used for concatenating netCDF data along an existing dimension, and it is designed as both a standalone utility and for use as a service in Harmony.

Getting started, with poetry

1. Follow the instructions for installing poetry here.
2. Install stitchee, with its dependencies, by running the following from the repository directory:

poetry install

How to test stitchee locally

poetry run pytest tests/

Usage

For example:

poetry run stitchee /path/to/files/directory -o output.nc --concat_method xarray-combine

Command line options:

$ poetry run stitchee --help
usage: stitchee [-h] -o PATH [--concat_method {xarray-concat,xarray-combine}] [--concat_dim DIM] [--sorting_variable VAR] [--xarray_arg_compat COMPAT]
                [--xarray_arg_combine_attrs ATTRS] [--xarray_arg_join JOIN] [-O] [-v]
                INPUT [INPUT ...]

Concatenate netCDF files along existing dimensions.

options:
  -h, --help            show this help message and exit
  -O, --overwrite       Overwrite output file if it exists
  -v, --verbose         Enable verbose output to stdout; useful for debugging

Required Arguments:
  INPUT                 Input specification: multiple file paths, directory path, text file with file list, or single file to copy
  -o PATH, --output_path PATH
                        Output file path for concatenated result

Concatenation Options:
  --concat_method {xarray-concat,xarray-combine}
                        Concatenation method (default: xarray-concat)
  --concat_dim DIM      Dimension to concatenate along (required for xarray-concat)
  --sorting_variable VAR
                        Name of a variable to use for sorting datasets before concatenation (e.g., 'time')

xarray Arguments:
  --xarray_arg_compat COMPAT
                        'compat' argument passed to xarray concatenation function
  --xarray_arg_combine_attrs ATTRS
                        'combine_attrs' argument passed to xarray concatenation function
  --xarray_arg_join JOIN
                        'join' argument passed to xarray concatenation function

Examples:
  stitchee file1.nc file2.nc -o output.nc --concat_dim time
  stitchee /path/to/files/directory -o output.nc --concat_method xarray-combine
  stitchee filelist.txt -o output.nc --concat_dim time --sorting_variable time

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This package is NASA Software Release Authorization (SRA) # LAR-20433-1