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STPT to Zarr converter

Convert STPT scan dataset to Zarr.

Install

pip install stpt2zarr

Requirements

  • click
  • dask
  • distributed
  • imaxt_image
  • python_dateutil
  • xarray
  • zarr

Usage

Arguments

  • input_path: the root folder of the STPT scan containing a mosaic file
  • output_path: the location where to store the converted output in Zarr format

From Python script

from stpt2zarr import stpt2zarr

stpt2zarr(input_path, output_path)

From the command line

stpt2zarr input_path output_path

Metadata

Release files for stpt2zarr 0.2.2

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