string-kernels 0.0.2

Polynomial String Kernel and linear time String Kernel. Supports multithreading and is compatible with Scikit-Learn SVMs.

String Kernels

This repo contains an implementation of the Polynomial String Kernel and a linear time String Kernel algorithm as described in our paper, High Resolution Ancestry Deconvolution for Next Generation Genomic Data.

It offers

• Linear time computation of two effective string kernels.

• Compatibility with Scikit-Learn's Support Vector Machines (easy plug-in).

• Multithreading.

See the notebook example.ipynb for demonstration of easy use.

If you end up using this in your research we kindly ask you to cite us! :)