stroke-segmentor 0.0.1

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Stroke Segmentor

State-of-the-art ischemic stroke lesion segmentation in MRI

Installation

With a Python 3.8+ environment, you can install stroke_segmentor directly from PyPI:

pip install stroke_segmentor

Use Cases and Tutorials

A minimal example to create a segmentation could look like this:

from stroke_segmentor.inferer import Inferer

inferer = Inferer()
pred = inferer.infer(
    dwi_path="path/to/dwi.nii.gz",
    adc_path="path/to/adc.nii.gz",
    segmentation_path="seg.nii.gz", # optional. the numpy array is always returned for direct usage
)

Citation

[!IMPORTANT] stroke_segmentor is part of the BrainLesion suite.
Please cite it support the development!
https://github.com/BrainLesion#-citing-brainlesion-suite

This project is based on DeepISLES and offers its NVAUTO algorithm. Please cite the original manuscript.

Contributing

We welcome all kinds of contributions from the community!

Reporting Bugs, Feature Requests and Questions

Please open a new issue here.

Code contributions

Nice to have you on board! Please have a look at our CONTRIBUTING.md file.