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Study Governor is a controller for data in large population imaging studies.

Project description

Study Governor is a controller for data in large population imaging studies.

Documentation

The Study Governor is documented at https://idsp-study-governor.readthedocs.io/

Installation and operation instructions

  1. Install mysql and libmysqlclient-dev (e.g. sudo apt-get install mysql-server libmysqlclient-dev)

  2. Run python setup.py install (or python setup.py develop inside a virtualenv if developing)

  3. Create the database in the following way:

`` # Go the mysql command line (add the -p if you have set a root password). $ sudo mysql (-p)

# Create user mysql> CREATE USER ‘studygovernor’@’localhost’ IDENTIFIED BY ‘blaat123’;

# Create database mysql> CREATE DATABASE studygovernor;

# Grant all permissions of the database to the user. mysql> GRANT ALL ON studygovernor.* TO ‘studygovernor’@’localhost’; ``

  1. Run studygov-db-init to initialize the database.

Adding some stuff via REST

>>> sub = {'label': 'sub_001', 'date_of_birth': '2000-12-25'}
>>> requests.post('http://localhost:5000/api/v1/subjects', json=sub)
>>> exp = {'label': 'exp_001', 'subject': '/api/v1/subjects/1', 'scandate': datetime.datetime.now().isoformat()}
>>> requests.post('http://localhost:5000/api/v1/experiments', json=exp)
>>> requests.get('http://localhost:5000/api/v1/experiments/1/state')
>>> requests.put('http://localhost:5000/api/v1/experiments/1/state', json={'state': '/api/v1/states/3'})

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