suffix-tree-tool 0.1.2

Generalized suffix tree generator and renderer

suffix-tree-tool

Command-line tool and Python library for building, annotating, and rendering generalized suffix trees. The project accepts up to five sequences, colors edges per sequence, and produces DOT/PDF output that is ready to embed in documents.

Installation

From PyPI:

pip install suffix-tree-tool

From a cloned repository:

pip install .

Or directly from Git (once the repository is public):

pip install git+https://github.com/EmericLaberge/suffix-tree-tool.git

Usage

Single-sequence example:

generate-suffix-tree gatgaatgg

Multi-sequence example with internal annotations:

generate-suffix-tree gatgaatgg ggtaagtag --annotate-internal

Key options:

• --include-terminal: keep the suffix that contains only the terminator.
• --unique-terminal: assign a distinct terminator to each sequence.
• --annotate-internal: display depth and sequence indices on internal nodes.

The renderer writes two files in the current directory:

• suffix_tree.dot
• suffix_tree.pdf (when Graphviz is available)

Rendered screenshots are available under examples/.

Python API

from suffix_tree_tool import process_sequences, build_suffix_tree, render_suffix_tree

License

Distributed under the MIT License (see LICENSE for details). For questions or contributions, email [e-mail].