SymScan
Check out the documentation page.
SymScan enables extremely fast discovery of pairs of similar strings within and across large collections.
SymScan is a variation on the symmetric deletion algorithm that is optimised for bulk-searching similar strings within one or across two large string collections at once (e.g. searching for similar protein sequences among a collection of 10M). The key algorithmic difference between SymScan and traditional symmetric deletion is the use of a sort-merge join approach in place of hash maps to discover input strings that share common deletion variants. This sort-and-scan approach trades off an additional factor of O(log N) (with N the total number of strings being compared) in expected time complexity for improved cache locality and effective parallelization, and ends up being much faster for the above use case.
Installing
CLI
brew install yutanagano/tap/symscan-cli
Rust library
cargo add symscan
Python package
pip install symscan
Licensing
SymScan is dual-licensed under the MIT and Apache 2.0 licenses. Unless explicitly stated otherwise, any contribution submitted by you, as defined in the Apache license, shall be dual-licensed as above, without any additional terms and conditions.
Metadata
Release files for symscan 0.8.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| symscan-0.8.3.tar.gz | 34.6 kB | Details |
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| symscan-0.8.3-cp314-cp314t-win_arm64.whl | CPython 3.14 | CPython 3.14 free-threading | Windows ARM64 | Details |
| symscan-0.8.3-cp314-cp314t-win_amd64.whl | CPython 3.14 | CPython 3.14 free-threading | Windows x86-64 | Details |
| symscan-0.8.3-cp314-cp314t-win32.whl | CPython 3.14 | CPython 3.14 free-threading | Windows x86-32 | Details |
| symscan-0.8.3-cp314-cp314t-musllinux_1_2_x86_64.whl | CPython 3.14 | CPython 3.14 free-threading | Linux musl 1.2+ x86-64 | Details |
| symscan-0.8.3-cp314-cp314t-musllinux_1_2_aarch64.whl | CPython 3.14 | CPython 3.14 free-threading | Linux musl 1.2+ ARM64 | Details |
| symscan-0.8.3-cp314-cp314t-manylinux_2_28_x86_64.whl | CPython 3.14 | CPython 3.14 free-threading | Linux glibc 2.28+ x86-64 | Details |
| symscan-0.8.3-cp314-cp314t-manylinux_2_28_aarch64.whl | CPython 3.14 | CPython 3.14 free-threading | Linux glibc 2.28+ ARM64 | Details |
| symscan-0.8.3-cp314-cp314t-macosx_11_0_arm64.whl | CPython 3.14 | CPython 3.14 free-threading | macOS 11.0+ ARM64 | Details |
| symscan-0.8.3-cp314-cp314t-macosx_10_15_x86_64.whl | CPython 3.14 | CPython 3.14 free-threading | macOS 10.15+ x86-64 | Details |
| symscan-0.8.3-cp310-abi3-win_arm64.whl | CPython 3.10 | abi3 | Windows ARM64 | Details |
| symscan-0.8.3-cp310-abi3-win_amd64.whl | CPython 3.10 | abi3 | Windows x86-64 | Details |
| symscan-0.8.3-cp310-abi3-win32.whl | CPython 3.10 | abi3 | Windows x86-32 | Details |
| symscan-0.8.3-cp310-abi3-musllinux_1_2_x86_64.whl | CPython 3.10 | abi3 | Linux musl 1.2+ x86-64 | Details |
| symscan-0.8.3-cp310-abi3-musllinux_1_2_aarch64.whl | CPython 3.10 | abi3 | Linux musl 1.2+ ARM64 | Details |
| symscan-0.8.3-cp310-abi3-manylinux_2_28_x86_64.whl | CPython 3.10 | abi3 | Linux glibc 2.28+ x86-64 | Details |
| symscan-0.8.3-cp310-abi3-manylinux_2_28_aarch64.whl | CPython 3.10 | abi3 | Linux glibc 2.28+ ARM64 | Details |
| symscan-0.8.3-cp310-abi3-macosx_11_0_arm64.whl | CPython 3.10 | abi3 | macOS 11.0+ ARM64 | Details |
| symscan-0.8.3-cp310-abi3-macosx_10_12_x86_64.whl | CPython 3.10 | abi3 | macOS 10.12+ x86-64 | Details |
Total release size: 5.6 MB
Release files / symscan-0.8.3.tar.gz
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| Download URL | symscan-0.8.3-cp310-abi3-macosx_11_0_arm64.whl |
|---|---|
| Size | 295.0 kB |
| Tags | CPython 3.10 abi3 macOS 11.0+ ARM64 |
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SHA-256 checksum How to use checksums |
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caec7071e003443163b2c303fee434611f5070521f20596d7bcdc7440589ef76
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twine/7.0.0 CPython/3.13.14
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Transparency logRelease files / symscan-0.8.3-cp310-abi3-macosx_10_12_x86_64.whl
| Download URL | symscan-0.8.3-cp310-abi3-macosx_10_12_x86_64.whl |
|---|---|
| Size | 320.4 kB |
| Tags | CPython 3.10 abi3 macOS 10.12+ x86-64 |
|
SHA-256 checksum How to use checksums |
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914a889a30b5c6b0e1aad0ad35d249ad5eaf17222b5783fd1881d45e3e218bab
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Uploaded using Trusted Publishing? What is trusted publishing? |
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| Uploaded via |
twine/7.0.0 CPython/3.13.14
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