syncup
Synchronizers for lazy iterators.
pip install syncup
Example
Iterate though a complete FASTX file and a filtered FASTX file, synchronizing on records present in both:
with (
FastxFile(in_source) as source,
FastxFile(in_subseq) as subseq,
):
for count, (fq, fq_subseq) in enumerate(
sync(
iter1=source,
iter2=subseq,
key1=lambda rec: rec.name,
key2=lambda rec: rec.name,
cmp_func=lambda x, y: (x == y) - 1, # only advance iter1 when non-equal
),
start=1,
):
assert fq.name == fq_subseq.name, f"Names for record {count} should be equal!"
Development and Testing
See the contributing guide for more information.
1 maintainer
Metadata
1 maintainer
Release files for syncup 0.1.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| syncup-0.1.0.tar.gz | 31.2 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| syncup-0.1.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 35.0 kB
Release files / syncup-0.1.0.tar.gz
| Download URL | syncup-0.1.0.tar.gz |
|---|---|
| Size | 31.2 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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| Download URL | syncup-0.1.0-py3-none-any.whl |
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| Size | 3.8 kB |
| Tags | Python 3 |
|
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| Uploaded via |
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|
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