tabled 0.1.29

A (key-value) data-object-layer to get (pandas) tables from a variety of sources with ease

tabled

A (key-value) data-object-layer to get (pandas) tables from a variety of sources with ease

To install: pip install tabled

SQLite Database Support

Tabled provides seamless integration with SQLite databases through DfFiles:

from tabled import DfFiles

# Automatic SQLite detection - just pass the database file path
df_files = DfFiles('my_database.db')

# Access tables as DataFrames
customers = df_files['customers.parquet']  # Full filename
orders = df_files['orders']                # Clean table name (both work)

# List available tables
print(list(df_files.keys()))  # ['customers.parquet', 'orders.parquet', ...]

# Or use the explicit method
df_files = DfFiles.from_sqlite_file('my_database.db')

Under the hood, SQLite tables are exported to temporary Parquet files for efficient access, with automatic cleanup when the program exits.

SQLite Export Tools

For more control over SQLite data extraction, use the sqlite_tools module:

from tabled.sqlite_tools import export_sqlite_to_dataframes, export_sqlite_to_parquet

# Export to DataFrames
tables = export_sqlite_to_dataframes('database.db')
customers_df = tables['customers']

# Export to Parquet files
export_sqlite_to_parquet('database.db', 'output_directory/')

Table Analysis and Diagnosis

The dataframe_info function provides flexible analysis of pandas DataFrames:

from tabled.diagnose import dataframe_info, register_info_func
import pandas as pd

# Analyze a DataFrame
df = pd.DataFrame({'a': [1, 2, 3], 'b': ['x', 'y', 'z']})
info = dataframe_info(df)
print(info['shape'])  # (3, 2)
print(info['columns'])  # ['a', 'b']

# Extend with custom analysis functions
def memory_usage(df):
    return df.memory_usage(deep=True).sum()

register_info_func('memory', memory_usage)
info = dataframe_info(df)
print(info['memory'])  # Memory usage in bytes

The analysis is completely customizable - you can register new analysis functions or provide custom info function dictionaries to focus on specific aspects of your data.

DfFiles

This section demonstrates how to use DfFiles to store and retrieve pandas DataFrames using various file formats.

Setup

First, let's import required packages and define our test data:

import os
import shutil
import tempfile

import pandas as pd
from tabled import DfFiles

# Test data dictionary
misc_small_dicts = {
    "fantasy_tavern_menu": {
        "item": ["Dragon Ale", "Elf Bread", "Goblin Stew"],
        "price": [7.5, 3.0, 5.5],
        "is_alcoholic": [True, False, False],
        "servings_left": [12, 25, 8],
    },
    "alien_abduction_log": {
        "abductee_name": ["Bob", "Alice", "Zork"],
        "location": ["Kansas City", "Roswell", "Jupiter"],
        "duration_minutes": [15, 120, 30],
        "was_returned": [True, False, True],
    }
}

Creating Test Directory

We'll create a temporary directory for our files:

def create_test_directory():
    # Create a directory for the test files
    rootdir = os.path.join(tempfile.gettempdir(), 'tabled_df_files_test')
    if os.path.exists(rootdir):
        shutil.rmtree(rootdir)
    os.makedirs(rootdir)
    print(f"Created directory at: {rootdir}")
    return rootdir

rootdir = create_test_directory()
print(f"Created directory at: {rootdir}")

Created directory at: /var/folders/mc/c070wfh51kxd9lft8dl74q1r0000gn/T/tabled_df_files_test
Created directory at: /var/folders/mc/c070wfh51kxd9lft8dl74q1r0000gn/T/tabled_df_files_test

Initialize DfFiles

Create a new DfFiles instance pointing to our directory:

df_files = DfFiles(rootdir)

Let's verify it starts empty:

list(df_files)

[]

Creating and Saving DataFrames

Let's create DataFrames from our test data:

fantasy_tavern_menu_df = pd.DataFrame(misc_small_dicts['fantasy_tavern_menu'])
alien_abduction_log_df = pd.DataFrame(misc_small_dicts['alien_abduction_log'])

print("Fantasy Tavern Menu:")
display(fantasy_tavern_menu_df)
print("\nAlien Abduction Log:")
display(alien_abduction_log_df)

Fantasy Tavern Menu:

	item	price	is_alcoholic	servings_left
0	Dragon Ale	7.5	True	12
1	Elf Bread	3.0	False	25
2	Goblin Stew	5.5	False	8

Alien Abduction Log:

	abductee_name	location	duration_minutes	was_returned
0	Bob	Kansas City	15	True
1	Alice	Roswell	120	False
2	Zork	Jupiter	30	True

Now let's save these DataFrames using different formats:

df_files['fantasy_tavern_menu.csv'] = fantasy_tavern_menu_df
df_files['alien_abduction_log.json'] = alien_abduction_log_df

Reading Data Back

Let's verify we can read the data back correctly:

saved_df = df_files['fantasy_tavern_menu.csv']
saved_df

	item	price	is_alcoholic	servings_left
0	Dragon Ale	7.5	True	12
1	Elf Bread	3.0	False	25
2	Goblin Stew	5.5	False	8

MutableMapping Interface

DfFiles implements the MutableMapping interface, making it behave like a dictionary.

Let's see how many files we have:

len(df_files)

2

List all available files:

list(df_files)

['fantasy_tavern_menu.csv', 'alien_abduction_log.json']

Check if a file exists:

'fantasy_tavern_menu.csv' in df_files

True

Supported File Extensions

Let's see what file formats DfFiles supports out of the box.

(Note that some of these will require installing extra packages, which you'll realize if you get an ImportError)

print("Encoder supported extensions:")
list_of_encoder_supported_extensions = list(df_files.extension_encoder_mapping)
print(*list_of_encoder_supported_extensions, sep=', ')

Encoder supported extensions:
csv, txt, tsv, json, html, p, pickle, pkl, npy, parquet, zip, feather, h5, hdf5, stata, dta, sql, sqlite, gbq, xls, xlsx, xml, orc

print("Decoder supported extensions:")
list_of_decoder_supported_extensions = list(df_files.extension_decoder_mapping)
print(*list_of_decoder_supported_extensions, sep=', ')

Decoder supported extensions:
csv, txt, tsv, parquet, json, html, p, pickle, pkl, xml, sql, sqlite, feather, stata, dta, sas, h5, hdf5, xls, xlsx, orc, sav

Testing Different Extensions

Let's try saving and loading our test DataFrame in different formats:

extensions_supported_by_encoder_and_decoder = (
    set(list_of_encoder_supported_extensions) & set(list_of_decoder_supported_extensions)
)
sorted(extensions_supported_by_encoder_and_decoder)

['csv',
 'dta',
 'feather',
 'h5',
 'hdf5',
 'html',
 'json',
 'orc',
 'p',
 'parquet',
 'pickle',
 'pkl',
 'sql',
 'sqlite',
 'stata',
 'tsv',
 'txt',
 'xls',
 'xlsx',
 'xml']

def test_extension(ext):
    filename = f'test_file.{ext}'
    try:
        df_files[filename] = fantasy_tavern_menu_df
        df_loaded = df_files[filename]
        # test the decoded df is the same as the one that was saved (round-trip test)
        # Note that we drop the index, since the index is not saved in the file by default for all codecs
        pd.testing.assert_frame_equal(
            fantasy_tavern_menu_df.reset_index(drop=True),
            df_loaded.reset_index(drop=True),
        )
        return True
    except Exception as e:
        return False


test_extensions = [
    'csv',
    'feather',
    'json',
    'orc',
    'parquet',
    'pkl',
    'tsv',  
    # 'dta',  # TODO: fix
    # 'h5',  # TODO: fix
    # 'html',  # TODO: fix
    # 'sql',  # TODO: fix
    # 'xml',  # TODO: fix
]

for ext in test_extensions:
    print("Testing extension:", ext)
    success = test_extension(ext)
    if success:
        print(f"\tExtension {ext}: ✓")
    else:
        print('\033[91m' + f"\tFix extension {ext}: ✗" + '\033[0m')
        
    # marker = '✓' if success else '\033[91m✗\033[0m'
    # print(f"\tExtension {ext}: {marker}")

Testing extension: csv
	Extension csv: ✓
Testing extension: feather
	Extension feather: ✓
Testing extension: json
	Extension json: ✓
Testing extension: orc
	Extension orc: ✓
Testing extension: parquet
	Extension parquet: ✓
Testing extension: pkl
	Extension pkl: ✓
Testing extension: tsv
	Extension tsv: ✓
Testing extension: dta
	Fix extension dta: ✗
Testing extension: h5
	Fix extension h5: ✗
Testing extension: html
	Fix extension html: ✗
Testing extension: sql
	Fix extension sql: ✗
Testing extension: xml
	Fix extension xml: ✗