target_benchmark 0.1.0

Table Retrieval for Generative Tasks Benchmark

TARGET: Table Retrieval for Generative Tasks Benchmark

Set Up TARGET

Install via pip

pip install target_benchmark

Install from source

git clone https://github.com/target-benchmark/target.git

cd target

pip install -e .

If you want to use the default generators for generating downstream task answers, you need to add your OpenAI API key as one of the environment variables:

export OPENAI_API_KEY=<your azure openai api key>

Features

• run evaluations on TARGET's baseline retrievers
• implement your own custom retrievers and generators
• create your own custom task

Usage Example: Evaluate Baseline Retriever

Let's see how we can run evaluation on a baseline retriever. We'll use LlamaIndex as an example:

from target_benchmark.evaluators import TARGET, get_task_names
# you can run `get_task_names()` to get all available tasks
from target_benchmark.retrievers import LlamaIndexRetriever

# specify a task and a dataset to run evaluations on.
target_fetaqa = TARGET(("Table Retrieval Task", "fetaqa"))
# create a new retriever object
llamaindex_retriever = LlamaIndexRetriever()
# run the evaluation!
performance = target_fetaqa.run(retriever=llamaindex_retriever, split="test", top_k=10)

# if you'd like, you can also persist the retrieval and downstream generation results
performance = target_fetaqa.run(retriever=llamaindex_retriever, split="test", top_k=10, retrieval_results_file="./retrieval.jsonl", downstream_results_file="./downstream.jsonl")

Create Retrievers

TARGET offers a simple interface for creating custom retrievers. You can either inherit from the AbsCustomEmbeddingRetriever class or the AbsStandardEmbeddingRetriever class.

Inheriting from AbsCustomEmbeddingRetriever Class

Inherit from this class if your retriever uses a custom format for embedding tables (e.g., specific directory structures or file types). The TARGET evaluator assumes that your retriever will manage the persistence of embeddings during evaluation.

When to Use This Class

• Custom Embedding Formats: Your retriever requires specific storage formats for embeddings.
• Self-Managed Persistence: You handle the storage and retrieval of embeddings yourself.

Implementing the Required Methods

To use this class, implement the following two methods:

1. embed_corpus

   • Parameters:
   • dataset_name: Identifier for the dataset.
   • corpus: The dataset to embed, provided as an iterable of dictionaries.

2. retrieve

   • Parameters:
     • query: The user's query string.
     • dataset_name: Identifier for the dataset.
     • top_k: Number of top results to return.
   • Returns: A list of tuples, where each tuple contains (database_id, table_id) of a retrieved table.

from target_benchmark.retrievers import AbsCustomEmbeddingRetriever
class YourRetriever(AbsCustomEmbeddingRetriever):
    # you can specify a `expected_corpus_format`
    # (ie nested array, dictionary, dataframe, etc.),
    # the corpus tables will be converted to this format
    # before passed into the `embed_corpus` function.
    def __init__(self, expected_corpus_format: str = "nested array", **kwargs):
        super().__init__(expected_corpus_format=expected_corpus_format)

    # returns a list of tuples, each being (database_id, table_id) of the retrieved table
    def retrieve(self, query: str, dataset_name: str, top_k: int) -> List[Tuple]:
        pass

    # returns nothing since the embedding persistence is dealt with within this function.
    def embed_corpus(self, dataset_name: str, corpus: Iterable[Dict]) -> None:
        pass

Inherit from AbsStandardEmbeddingRetriever Class

Inherit from this class if your retriever returns a vector embedding for each table and query. It automatically handles vector data storage using an in-memory Qdrant vector database, so data is not persisted across calls to TARGET.run. (support for persistence across evaluation runs will be included in the future)

Why Inherit from This Class?

Consider inheriting from this class instead of AbsCustomEmbeddingRetriever if:

• Simple Embedding Output: Your retriever outputs embeddings as vectors (lists of floats).
• No Special Storage Needs: Your retrieval system doesn't require specific persistence formats or folder structures.

How to Use This Class

To inherit from this class, you need to implement two methods:

1. embed_query: Returns an embedding vector for a given query.

   • Parameters:
     • query: The user's query string.
     • dataset_name: Identifier for the dataset.
   • Returns: embedding of query in a numpy array

2. embed_corpus: Returns embedding vectors for each item in the corpus (e.g., tables or documents).

   • Parameters:
   • dataset_name: Identifier for the dataset.
   • corpus_entry: An entry in the corpus dataset.
   • Returns: embedding of corpus entry in a numpy array

from target_benchmark.retrievers import AbsStandardEmbeddingRetriever
class YourRetriever(AbsStandardEmbeddingRetriever):
    def __init__(self, expected_corpus_format: str = "nested array", **kwargs):
        super().__init__(expected_corpus_format=expected_corpus_format)

    #return the embeddings for the query as a numpy array
    def embed_query(self, query: str, dataset_name: str,) -> np.ndarray:
        pass

    # returns embedding of the passed in table as a numpy array
    def embed_corpus(self, dataset_name: str, corpus_entry: Dict) -> np.ndarray:
        pass

Note on corpus and corpus_entry Formatting

TARGET provides standardized formatting for the corpus datasets. More specifically, each TARGET corpus dataset includes the following columns:

• database_id (str): database that the table belongs to.
• table_id (str): table's identifier.
• table: the actual table contents. default format is nested array, but you can specify the expected format to be dictionary or dataframe in your retriever's constructor. Tables are automatically converted to the expected format before passed into the embed_corpus function.
• context (dict): any metadata associated with the table. for example, text-2-sql datasets' context often include primary and foreign key information.

Both retriever classes' embed_corpus function takes in corpus information.

• AbsStandardEmbeddingRetriever: corpus_entry is a single entry within the corpus dataset. for example, it may look like this:

{
    "database_id": "0",
    "table_id": "totto_source/train_json/example-10461.json",
    "table": <table contents in the retriever's expected format>,
    "context": {"table_page_title": "1982 Illinois gubernatorial election",
  "table_section_title": "Results"},
}

• AbsCustomEmbeddingRetriever: corpus is an iterable of dictionaries. Each dictionary contains a batch of corpus entries. For example:

{
    "database_id": ["0", "1"],
    "table_id": ["Serbia_at_the_European_Athletics_Championships_2", "List_of_University_of_Texas_at_Austin_alumni_20"],
    "table": [<table content>, <table content>],
    "context": [{"section_title": "Indoor -- List of Medalists"}, {"section_title": "Literature , writing , and translation"}],
}

The length of the lists will correspond to the batch size specified when calling TARGET.run.

Create Custom Generators

Creating your customer generators for downstream tasks is also straightforward. You only need to implement one function,

• generate
  • Parameters:
  • table_str: String of the retrieved table contents.
  • query: The natural language query.

from target_benchmark.generators import AbsGenerator
class YourCustomGenerator(AbsGenerator):
    # returns the answer to the query
    def generate(self, table_str: str, query: str) -> str:
        pass

To use your generators, first create a task object, and pass the generator into the task object:

from target_benchmark.evaluators import TARGET
from target_benchmark.tasks import QuestionAnsweringTask
qa_task = QuestionAnsweringTask(task_generator=YourGenerator())
target_evaluator = TARGET(downstream_tasks=qa_task)

Note that here instead of specifying the task by its name, we are passing in a task object instead with the generator set to our created custom generator.