TCIA Radiogenomics Processing Protocol
Radiology image processing of TCGA/TCIA data.
Getting Started
To run the code in this repository, follow these steps:
git clone https://github.com/pachterlab/tcia-radiology-processing.git
cd tcia-radiology-processing
We recommend using an environment manager such as conda. Some additional non-python packages must be installed for full functionality. If using conda (recommended), simply run the following:
conda env create -f environment.yml
conda activate tcia_radiology_processing
Otherwise, install these packages manually as-needed (see environment.yml and pyproject.toml for the list of packages and recommended versions).
(Optional) For development, explicitely install the package in editable mode with the following command:
pip install -e .
Notebooks
See the notebooks directory for the data processing protocol in a Jupyter notebook format.
License
This project is licensed under the BSD 2-Clause License. See the LICENSE file for details.
For any issues or contributions, feel free to open a pull request or issue in this repository.
1 maintainer
Metadata
1 maintainer
Release files for tcia-radiology-processing 0.1.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| tcia_radiology_processing-0.1.0.tar.gz | 38.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| tcia_radiology_processing-0.1.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 76.8 kB
Release files / tcia_radiology_processing-0.1.0.tar.gz
| Download URL | tcia_radiology_processing-0.1.0.tar.gz |
|---|---|
| Size | 38.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
ea035d268c603f5b8bc2e5f403a0c084333b012196b81680e26a34f2d400480f
|
|
BLAKE2b-256 checksum How to use checksums |
4811864f8070d5668b1de54b24a8a51b142b1321e77ec869ece2e3c5004e0590
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.10.20
|
Release files / tcia_radiology_processing-0.1.0-py3-none-any.whl
| Download URL | tcia_radiology_processing-0.1.0-py3-none-any.whl |
|---|---|
| Size | 38.0 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
2be7b5d08f25efa2c532c61273e63cf314ec80a6f3075a0b56582879fea999f0
|
|
BLAKE2b-256 checksum How to use checksums |
d58f3ffa87cc60854aec24af4caf24e94e4d39ed728213a266069611c5f6ad51
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.10.20
|
