teamtomo 0.0.1

Modular Python packages for cryo-EM and cryo-ET

TeamTomo

TeamTomo is a set of modular Python package for cryo-EM and cryo-ET for the modern scientific computing environment. This unified repository contains most of the core TeamTomo data processing functionality under a single umbrella for better maintainability and cross-package development.

List of Packages

TODO

Getting Started

Installation for Developers

The development workspace depends on the uv tool for Python environment/package management.

First, clone and navigate into the root of the repository:

git clone https://github.com/teamtomo/teamtomo.git
cd teamtomo

Then, create and activate a new virtual environment:

uv venv
source .venv/bin/activate

And finally sync with the repository to install packages

uv sync --all-extras --all-packages

Note that the --all-extras and --all-packages flags install the development and testing requirements for all sub-packages. More granular install options are possible, if your system requires it.