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Project description
The Curator helps you define pipelines for transforming dirty data into consumable databases.
Usage
from thecurator import Curator
# Paths to files describing different tables
table_descriptions = ['patient.yml', 'lab.yml']
curator = Curator(sqlalchemy_engine, table_descriptions)
# Transform a pandas DataFrame according to the descriptions
curator.transform_df('patient', patient_df)
# Transform a dictionary array according to the descriptions
curator.transform_dicts('patient', patient_dicts)
# Transform and insert a dictionary array according to the descriptions
curator.insert_dicts('lab', lab_dicts)See the tests for more examples. More coming soon…
Development
Install development requirements pip install -r dev-requirements.txt
Make changes
Run the tests pytest tests
See the Makefile for other useful commands
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