Thoa CLI

Command-line interface for running bioinformatics workflows on the Thoa cloud platform.

Submit Snakemake and Nextflow pipelines, manage datasets, and monitor jobs — without managing infrastructure.

Installation

pip install thoa

Quick Start

Create your API key at thoa.io/workbench/api_keys, then:

export THOA_API_KEY="your_api_key"

thoa run \
  --cmd "bwa mem ref.fa reads.fq > aligned.sam" \
  --tools "bwa,samtools" \
  --n-cores 16 \
  --ram 64 \
  --input ./data \
  --output ./results

Commands

Documentation

• Quickstart — install and run your first job
• CLI Guide — full CLI reference
• Cookbook — reproducible analysis recipes
• Full Docs — platform overview and concepts