Thoa CLI

Command-line interface for running bioinformatics workflows on the Thoa cloud platform.

Submit Snakemake and Nextflow pipelines, manage datasets, and monitor jobs — without managing infrastructure.

Installation

pip install thoa

Quick Start

Create your API key at thoa.io/workbench/api_keys, then:

export THOA_API_KEY="your_api_key"

thoa run \
  --cmd "bwa mem ref.fa reads.fq > aligned.sam" \
  --tools "bwa,samtools" \
  --n-cores 16 \
  --ram 64 \
  --input ./data \
  --output ./results

Commands

Command	Description
`thoa run`	Submit a remote job
`thoa dataset list`	List available datasets
`thoa dataset download`	Download a dataset
`thoa jobs list`	List recent jobs
`thoa tools`	Show available Bioconda/conda-forge packages

Documentation

Quickstart — install and run your first job
CLI Guide — full CLI reference
Cookbook — reproducible analysis recipes
Full Docs — platform overview and concepts

Release files for thoa 0.1.7

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for thoa 0.1.7
File	Size	Uploaded
thoa-0.1.7.tar.gz	43.3 kB	Jul 25, 2026	Details

Built distribution (wheel)

Table of built distributions (wheels) for thoa 0.1.7
File	Interpreter	ABI	Platform	Reset
thoa-0.1.7-py3-none-any.whl 53.6 kB Jul 25, 2026	Python 3	none	any	Details

Total release size: 96.9 kB

Release files / thoa-0.1.7.tar.gz

Download URL	thoa-0.1.7.tar.gz
Size	43.3 kB
Tags	Source
SHA-256 checksum How to use checksums	`ad4e044271e706cddd90b2f28bc008d9af2ba854b33a30ee8972e997c29c5aed`
BLAKE2b-256 checksum How to use checksums	`18d671cf7ab894626b46251b5f99f4825399484b4ce9a2784af73459cd0c447c`
Upload date	Jul 25, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`poetry/2.4.1 CPython/3.10.20 Linux/6.17.0-1020-azure`

Release files / thoa-0.1.7-py3-none-any.whl

Download URL	thoa-0.1.7-py3-none-any.whl
Size	53.6 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`b8f1917bdf3e8c486901e9ad61b6664bf939861037b8f3f743ae64ace71a2d9c`
BLAKE2b-256 checksum How to use checksums	`4a4f5377800f51ee97b0e259f367949fb12f093652bc5b8e03892a31e50c7c1e`
Upload date	Jul 25, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`poetry/2.4.1 CPython/3.10.20 Linux/6.17.0-1020-azure`