tidygraphtool 0.2.1

A tidy API for network manipulation with Graph-tool inspired by tidygraph.

tidygraphtool

A tidy API for network manipulation with graph-tool library inspired by tidygraph. This is an experimental project of mine. Use at your own risk.

Usage

from tidygraphtool.all import *
g = play_sbm(n_k=500)
(
  g >>
    activate("nodes") >>
    add_property("degree", centrality_degree, mode="total") >>
    filter_on("degree == 2") >>
    summary()
)

Installation

Installation is a bit weird because graph-tool cannot be pip-install. The easiest way to install is to clone this repo, then from the root directory of the package:

conda env create --file tidy_gt.yml &&
conda activate tidy_gt &&
pip install tidygraphtool

The first and second lines create an environement with all the depenencies from gt.yml. The third line install tidygraphtool from pypi the package at large within the gt environment.

INSPIRATION

• graph_tool: tidygraph is thin wrapper of graph_tool (https://graph-tool.skewed.de/).
• tidygraph: the tidy API that cast graph analysis as two dataframe (https://github.com/thomasp85/tidygraph).
• dplyr: verbs like API from which tidygraph draw inspiration .

MODELS TO INTEGRATE

• hSBM_Topicmodel: topic modeling based on graph_tool (https://github.com/martingerlach/hSBM_Topicmodel)
• bipartiteSBM: bipartite community detection based on graph_tool (https://github.com/junipertcy/bipartiteSBM)

PROTOYPE FUNCTIONAL INTERFACE

#### Current
g = gt_graph(nodes=nodes, edges=edges)
g = add_property(g, "node_coreness", node_coreness)
g = add_property(g, "pr", centrality_pagerank)
g = filter_on(g, "node_coreness > 3")
g = activate(g, "edges")
g = add_property(g, "edge_bet", centrality_edge_betweenness)

g = gt_graph(nodes=nodes, edges=edges)
g = (g >>
       add_property("node_coreness", node_coreness(g)) >>
       add_property("pr", centrality_pagerank(g)) >>
       filter_on("node_coreness > 3 & pr > 10") >>
       activate("edges") >>
       add_property("edge_bet", centrality_edge_betweenness(g)))