Simple package to convert small tif files to zarr format.
Project description
This script could be used for conversion of a .tiff file to .zarr format with OME-NGFF multiscales metadata structure.
How to run
- open command line terminal
- install poetry tool for dependency management and packaging: https://pypi.org/project/poetry/
- switch to the tif_to_zarr directory:
cd PATH_TO_DIRECTORY/tif_to_zarr - install python dependencies:
poetry install - run script using cli:
poetry run python src/tif_to_zarr.py --src=PATH_TO_SOURCE_DIRECTORY/input_file.tif --dest=PATH_TO_DEST_DIRECTORY/output_file.zarr - to convert a tiff file to zarr with custom metadata values, you can run smthg similar to this:
poetry run python3 src/tif_to_zarr.py --src=path_to_source_tif --dest=path_to_output_zarr -a x z y -t 1.0 2.0 3.0 -s 4.0 5.0 6.0 -u nanometer nanometer nanometer - To get the list of options, you may run this:
poetry run python3 src/tif_to_zarr.py --help
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
tif_to_zarr-0.4.tar.gz
(2.8 kB
view details)
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file tif_to_zarr-0.4.tar.gz.
File metadata
- Download URL: tif_to_zarr-0.4.tar.gz
- Upload date:
- Size: 2.8 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.0.0 CPython/3.10.13
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
c8c15c0f643f170a7ef8671975a09265f386908a8bfb132a301df433feb55fbd
|
|
| MD5 |
136eca5266dbf0201ad4e4326062aeb1
|
|
| BLAKE2b-256 |
ab7b1df5fb4261b7d1e48f81b822607fa4ec5854966f3cd27b61e6a3e6d99287
|
File details
Details for the file tif_to_zarr-0.4-py3-none-any.whl.
File metadata
- Download URL: tif_to_zarr-0.4-py3-none-any.whl
- Upload date:
- Size: 2.5 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.0.0 CPython/3.10.13
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
cd4c06f5fab809039994b05acfd4063bcaedd6d0098a143e575b7c8aedfeda87
|
|
| MD5 |
7f173172394e6a3f65cfacca9883eb3e
|
|
| BLAKE2b-256 |
d11c3a70b6de7476c202a7a2d81fc467279d98db2be0cb0939d89772b11881e5
|
