Overview

This is a POC Python implementation of the proposed Unified Single-cell Data Model.

Installation

This code is hosted at PyPI, so you can do

python -m pip install tiledbsc

To install a specific version:

python -m pip install git+https://github.com/single-cell-data/TileDB-SingleCell.git@0.0.6#subdirectory=apis/python

To update to the latest version:

python -m pip install --upgrade tiledbsc

This requires tiledb (see ./setup.cfg for version), in addition to other dependencies in setup.cfg.
Clone this repo
cd into your checkout and then cd apis/python
python -m pip install .
Or, if you wish to modify the code and run it, python setup.py develop
Optionally, if you prefer, you can run that inside venv:

python -m venv venv
. ./venv/bin/activate
python -m pip install .

python -m pytest tests

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Table of built distributions (wheels) for tiledbsc 0.1.11
File	Interpreter	ABI	Platform	Reset
tiledbsc-0.1.11-py3-none-any.whl 65.2 kB Sep 12, 2022	Python 3	none	any	Details

Download URL	tiledbsc-0.1.11-py3-none-any.whl
Size	65.2 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`728def2e6e88e70a287af9515eb50bf99399a6aa9fe6360b083624c3996efa45`
BLAKE2b-256 checksum How to use checksums	`1aeacc6e37891ffdafc7ab37ba86b11eba00ae88927bd8130ec7fd496e7c64d4`
Upload date	Sep 12, 2022
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/4.0.1 CPython/3.9.14`