Common code for the Lenstra lab.
Project description
Common Code
Code that both LiveCellAnalysis and smFISH (or others) use and doesn't get major changes goes here.
Installation (Ubuntu)
pip install tllab_common
or editable:
git clone git@github.com:Lenstralab/tllab_common.git
pip install -e tllab_common/ --user
Installation of Maven and OpenJDK
Running the livecell_track_movies pipeline with segmentation using trackmate requires OpenJDK and Maven. If not installed already you will have to install them manually and make sure mvn is on the path.
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