Master:
Develop:
Anaconda Cloud latest package:
A toolkit for ETL curation for the tranSMART data warehouse. The TranSMART curation toolkit (tmtk) can be used to edit and validate studies prior to loading them with transmart-batch.
For general documentation visit readthedocs.
Installation
Installing via Anaconda Cloud or Pip package managers
Anaconda:
conda install -c conda-forge tmtkPip:
pip install tmtkInstalling manually
Initialize a virtualenv
python3 -m venv env
source env/bin/activateInstallation from source
To install tmtk and all dependencies into your Python environment, and enable the Arborist Jupyter notebook extension, run:
pip install -r requirements.txt
python setup.py installor if you want to run the tool from code in development mode:
pip install -r requirements.txt
python setup.py develop
jupyter-nbextension install --py tmtk.arborist
jupyter-serverextension enable tmtk.arboristRequirements
The dependencies are in requirements.txt, optional dependencies are in requirements-dev.txt.
Licence
LGPL-3.0
Release files for tmtk 0.5.8
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| tmtk-0.5.8.tar.gz | 445.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| tmtk-0.5.8-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 931.5 kB
Release files / tmtk-0.5.8.tar.gz
| Download URL | tmtk-0.5.8.tar.gz |
|---|---|
| Size | 445.1 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.2.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/49.2.0 requests-toolbelt/0.9.1 tqdm/4.48.0 CPython/3.8.2
|
Release files / tmtk-0.5.8-py3-none-any.whl
| Download URL | tmtk-0.5.8-py3-none-any.whl |
|---|---|
| Size | 486.4 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.2.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/49.2.0 requests-toolbelt/0.9.1 tqdm/4.48.0 CPython/3.8.2
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