tomwer 2.0.0.dev0

Tomography workflow tools

Introduction

Tomwer provides tools to automate acquisition and reconstruction processes for tomography. The package includes:

• A library to individually access each acquisition process.

• Graphical User Interface (GUI) applications to control key processes such as reconstruction and data transfer, which can be executed as standalone applications.

• An Orange add-on to help users define custom workflows (Orange3).

Tomwer relies on Nabu for tomographic reconstruction.

Note: Currently, the software is only compatible with Linux.

Documentation

The documentation is available here:

Stable Version

Latest Version

Installation

To install Tomwer with all features:

pip install tomwer[full]

Alternatively, you can install the latest development branch from the repository:

pip install git+https://gitlab.esrf.fr/tomotools/tomwer/#egg=tomwer[full]

Launching Applications

After installation, Tomwer includes several applications. You can launch an application by running:

tomwer <appName> [options]

• If you run tomwer without arguments, a manual page will be displayed.

• For application-specific help, run:

tomwer <appName> --help

Tomwer Canvas - Orange Canvas

You can launch the Orange canvas to create workflows using the available building blocks:

tomwer canvas

• Alternatively, you can use orange-canvas.

• If you’re using a virtual environment, remember to activate it:

source myvirtualenv/bin/activate

Building Documentation

To build the documentation:

sphinx-build doc build/html

The documentation will be generated in doc/build/html, and the entry point is index.html. To view the documentation in a browser:

firefox build/html/index.html

Note: Building the documentation requires sphinx to be installed, which is not a hard dependency of Tomwer. If needed, install it separately.