topoly

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5 files were added to this release more than 14 days after its initial publication. Inspect the release files before installing.

Topoly is a Python package that collects programs useful for polymer topology analysis.

What you can do with Topoly?

Find knots, links, lassos, theta-curves, handcuffs and their type.
Calculate knot/link invariants:
- Polynomials: Alexander, Jones, Conway, HOMFLY, Yamada, Kauffman, BLM/Ho,
- Brackets: Kauffman, APS,
- Other: writhe, Gaussian linking number.
Find minimal surface of a loop.
Simplify polymer structure preserving its topology.
Generate random polygon structures: walks, loops, lassos, handcuffs.
Generate knot map (like in KnotProt).
Calculate sum (U) and product (#) of knots.
Visualize structures.

Provided executable programs

Apart from a Python library, this package provides a set of executable programs:

knotnet - find knots using the Alexander Polynomial
homflylink
surfacesmytraj
ncuclinks
lmpoly
gln - compute the Gaussian linking number

Installation

Make sure you have a recent version of pip. You can upgrade it by running:

pip3 install --upgrade pip

Install Topoly using the standard python package installer PIP:

pip3 install topoly

Topoly can be installed without administrative privileges in the home folder of a particular user or in a Python Virtual Environment. In that case all files (binaries, documentation, libraries and python modules) will be installed in:

$HOME/.local/

or venv/ respectively.

If you choose to install Topoly with administrative privileges then everything will be installed in: /usr/local/

Using Topoly

Have a look at our website: https://topoly.cent.uw.edu.pl

or our tutorial project: https://github.com/ilbsm/topoly_tutorial

Contact

INTERDISCIPLINARY LABORATORY of BIOLOGICAL SYSTEMS MODELLING, University of Warsaw, Warsaw, Poland

https://jsulkowska.cent.uw.edu.pl/

Metadata

Release files for topoly 1.1.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Files added late

5 files were uploaded more than 14 days after the first file in this release.

While project maintainers occasionally add legitimate files to an existing release, late additions can also indicate a security compromise.

We recommend inspecting the release files before installing.

Built distributions (wheels)

Table of built distributions (wheels) for topoly 1.1.0
File	Interpreter	ABI	Platform	Reset
topoly-1.1.0-cp314-cp314-macosx_11_0_arm64.whl 6.0 MB May 17, 2026	CPython 3.14	CPython 3.14	macOS 11.0+ ARM64	Details
topoly-1.1.0-cp313-cp313-win_amd64.whl 15.2 MB May 8, 2025	CPython 3.13	CPython 3.13	Windows x86-64	Details
topoly-1.1.0-cp313-cp313-manylinux2014_x86_64.whl 9.6 MB May 7, 2025	CPython 3.13	CPython 3.13	Linux glibc 2.17+ x86-64	Details
topoly-1.1.0-cp313-cp313-macosx_12_0_arm64.whl 6.6 MB May 11, 2025	CPython 3.13	CPython 3.13	macOS 12.0+ ARM64	Details
topoly-1.1.0-cp313-cp313-macosx_11_0_arm64.whl 6.0 MB May 17, 2026	CPython 3.13	CPython 3.13	macOS 11.0+ ARM64	Details
topoly-1.1.0-cp313-cp313-macosx_10_13_intel.whl 6.1 MB May 16, 2025	CPython 3.13	CPython 3.13	macOS 10.13+ Intel (x86-64, i386)	Details
topoly-1.1.0-cp312-cp312-win_amd64.whl 15.2 MB May 8, 2025	CPython 3.12	CPython 3.12	Windows x86-64	Details
topoly-1.1.0-cp312-cp312-manylinux2014_x86_64.whl 9.6 MB May 7, 2025	CPython 3.12	CPython 3.12	Linux glibc 2.17+ x86-64	Details
topoly-1.1.0-cp312-cp312-macosx_12_0_arm64.whl 6.6 MB May 11, 2025	CPython 3.12	CPython 3.12	macOS 12.0+ ARM64	Details
topoly-1.1.0-cp312-cp312-macosx_11_0_arm64.whl 6.0 MB May 17, 2026	CPython 3.12	CPython 3.12	macOS 11.0+ ARM64	Details
topoly-1.1.0-cp312-cp312-macosx_10_13_intel.whl 6.1 MB May 16, 2025	CPython 3.12	CPython 3.12	macOS 10.13+ Intel (x86-64, i386)	Details
topoly-1.1.0-cp311-cp311-win_amd64.whl 15.2 MB May 8, 2025	CPython 3.11	CPython 3.11	Windows x86-64	Details
topoly-1.1.0-cp311-cp311-manylinux2014_x86_64.whl 9.5 MB May 7, 2025	CPython 3.11	CPython 3.11	Linux glibc 2.17+ x86-64	Details
topoly-1.1.0-cp311-cp311-macosx_12_0_arm64.whl 5.9 MB May 11, 2025	CPython 3.11	CPython 3.11	macOS 12.0+ ARM64	Details
topoly-1.1.0-cp311-cp311-macosx_11_0_arm64.whl 6.0 MB May 17, 2026	CPython 3.11	CPython 3.11	macOS 11.0+ ARM64	Details
topoly-1.1.0-cp311-cp311-macosx_10_13_intel.whl 6.1 MB May 16, 2025	CPython 3.11	CPython 3.11	macOS 10.13+ Intel (x86-64, i386)	Details
topoly-1.1.0-cp310-cp310-win_amd64.whl 15.2 MB May 8, 2025	CPython 3.10	CPython 3.10	Windows x86-64	Details
topoly-1.1.0-cp310-cp310-manylinux2014_x86_64.whl 9.4 MB May 7, 2025	CPython 3.10	CPython 3.10	Linux glibc 2.17+ x86-64	Details
topoly-1.1.0-cp310-cp310-macosx_12_0_arm64.whl 5.9 MB May 11, 2025	CPython 3.10	CPython 3.10	macOS 12.0+ ARM64	Details
topoly-1.1.0-cp310-cp310-macosx_11_0_arm64.whl 6.0 MB May 17, 2026	CPython 3.10	CPython 3.10	macOS 11.0+ ARM64	Details
topoly-1.1.0-cp310-cp310-macosx_10_10_intel.whl 6.2 MB May 8, 2025	CPython 3.10	CPython 3.10	macOS 10.10+ Intel (x86-64, i386)	Details
topoly-1.1.0-cp39-cp39-win_amd64.whl 15.2 MB May 8, 2025	CPython 3.9	CPython 3.9	Windows x86-64	Details
topoly-1.1.0-cp39-cp39-manylinux2014_x86_64.whl 9.4 MB May 7, 2025	CPython 3.9	CPython 3.9	Linux glibc 2.17+ x86-64	Details
topoly-1.1.0-cp39-cp39-macosx_12_0_arm64.whl 5.9 MB May 11, 2025	CPython 3.9	CPython 3.9	macOS 12.0+ ARM64	Details
topoly-1.1.0-cp39-cp39-macosx_10_10_intel.whl 6.2 MB May 8, 2025	CPython 3.9	CPython 3.9	macOS 10.10+ Intel (x86-64, i386)	Details
topoly-1.1.0-cp38-cp38-manylinux2014_x86_64.whl 9.5 MB May 7, 2025	CPython 3.8	CPython 3.8	Linux glibc 2.17+ x86-64	Details
topoly-1.1.0-cp38-cp38-macosx_10_10_intel.whl 6.2 MB May 8, 2025	CPython 3.8	CPython 3.8	macOS 10.10+ Intel (x86-64, i386)	Details
topoly-1.1.0-cp37-cp37m-manylinux2014_x86_64.whl 9.5 MB May 7, 2025	CPython 3.7	CPython 3.7 pymalloc	Linux glibc 2.17+ x86-64	Details
topoly-1.1.0-cp36-cp36m-manylinux2014_x86_64.whl 9.2 MB May 7, 2025	CPython 3.6	CPython 3.6 pymalloc	Linux glibc 2.17+ x86-64	Details

Total release size: 249.6 MB

Release files / topoly-1.1.0-cp314-cp314-macosx_11_0_arm64.whl

File added late

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Download URL	topoly-1.1.0-cp314-cp314-macosx_11_0_arm64.whl
Size	6.0 MB
Tags	CPython 3.14 macOS 11.0+ ARM64
SHA-256 checksum How to use checksums	`205688847d0f94a15adc82fb831e1cc0b235c151f16813042ec94c709ba00095`
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Release files / topoly-1.1.0-cp313-cp313-win_amd64.whl

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Size	15.2 MB
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Release files / topoly-1.1.0-cp313-cp313-manylinux2014_x86_64.whl

Download URL	topoly-1.1.0-cp313-cp313-manylinux2014_x86_64.whl
Size	9.6 MB
Tags	CPython 3.13 Linux glibc 2.17+ x86-64
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Release files / topoly-1.1.0-cp313-cp313-macosx_12_0_arm64.whl

Download URL	topoly-1.1.0-cp313-cp313-macosx_12_0_arm64.whl
Size	6.6 MB
Tags	CPython 3.13 macOS 12.0+ ARM64
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Size	6.0 MB
Tags	CPython 3.13 macOS 11.0+ ARM64
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Release files / topoly-1.1.0-cp313-cp313-macosx_10_13_intel.whl

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Size	6.1 MB
Tags	CPython 3.13 macOS 10.13+ Intel (x86-64, i386)
SHA-256 checksum How to use checksums	`d98b44ac00aa6587302b6c198c80ba536b9bc96ac90773f78daabc38f4ed078b`
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Release files / topoly-1.1.0-cp312-cp312-win_amd64.whl

Download URL	topoly-1.1.0-cp312-cp312-win_amd64.whl
Size	15.2 MB
Tags	CPython 3.12 Windows x86-64
SHA-256 checksum How to use checksums	`9048d1f0a847a2e65a4e2f35457208c38d9da5d84c7d93bee3dcaba38839cfa5`
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Release files / topoly-1.1.0-cp312-cp312-manylinux2014_x86_64.whl

Download URL	topoly-1.1.0-cp312-cp312-manylinux2014_x86_64.whl
Size	9.6 MB
Tags	CPython 3.12 Linux glibc 2.17+ x86-64
SHA-256 checksum How to use checksums	`e92f691b45211f4441c660333b71904d2bca818bac16f7ed166cf7ab11b47508`
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Release files / topoly-1.1.0-cp312-cp312-macosx_12_0_arm64.whl

Download URL	topoly-1.1.0-cp312-cp312-macosx_12_0_arm64.whl
Size	6.6 MB
Tags	CPython 3.12 macOS 12.0+ ARM64
SHA-256 checksum How to use checksums	`11fa8b197722d5ce9463be5c56de37215a4725e92627c22db820483eef5befd4`
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Tags	CPython 3.12 macOS 11.0+ ARM64
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Release files / topoly-1.1.0-cp312-cp312-macosx_10_13_intel.whl

Download URL	topoly-1.1.0-cp312-cp312-macosx_10_13_intel.whl
Size	6.1 MB
Tags	CPython 3.12 macOS 10.13+ Intel (x86-64, i386)
SHA-256 checksum How to use checksums	`aa1af5c68ac3016d72f92114bc9b830aa4ae528ef9a77e54e042ed85435101f5`
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Release files / topoly-1.1.0-cp311-cp311-win_amd64.whl

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Size	15.2 MB
Tags	CPython 3.11 Windows x86-64
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Release files / topoly-1.1.0-cp311-cp311-manylinux2014_x86_64.whl

Download URL	topoly-1.1.0-cp311-cp311-manylinux2014_x86_64.whl
Size	9.5 MB
Tags	CPython 3.11 Linux glibc 2.17+ x86-64
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Release files / topoly-1.1.0-cp311-cp311-macosx_12_0_arm64.whl

Download URL	topoly-1.1.0-cp311-cp311-macosx_12_0_arm64.whl
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Download URL	topoly-1.1.0-cp311-cp311-macosx_10_13_intel.whl
Size	6.1 MB
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Release files / topoly-1.1.0-cp310-cp310-win_amd64.whl

Download URL	topoly-1.1.0-cp310-cp310-win_amd64.whl
Size	15.2 MB
Tags	CPython 3.10 Windows x86-64
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Download URL	topoly-1.1.0-cp310-cp310-manylinux2014_x86_64.whl
Size	9.4 MB
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Download URL	topoly-1.1.0-cp310-cp310-macosx_12_0_arm64.whl
Size	5.9 MB
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Size	6.0 MB
Tags	CPython 3.10 macOS 11.0+ ARM64
SHA-256 checksum How to use checksums	`cf7b2b10dfa5345d94a8c135e50a526af88fe0f5cb749c8091316451643fe0d3`
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Release files / topoly-1.1.0-cp310-cp310-macosx_10_10_intel.whl

Download URL	topoly-1.1.0-cp310-cp310-macosx_10_10_intel.whl
Size	6.2 MB
Tags	CPython 3.10 macOS 10.10+ Intel (x86-64, i386)
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Uploaded via	`twine/4.0.0 CPython/3.10.12`

Release files / topoly-1.1.0-cp39-cp39-win_amd64.whl

Download URL	topoly-1.1.0-cp39-cp39-win_amd64.whl
Size	15.2 MB
Tags	CPython 3.9 Windows x86-64
SHA-256 checksum How to use checksums	`bab0cab5ff9d2ee3e0aace31070dad706da6397fc35e3f4d7369747649d7b026`
BLAKE2b-256 checksum How to use checksums	`9dd013a56455fc30fc564f325ba8514adf721593a8ff0ac016546efbfd088060`
Upload date	May 8, 2025
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/6.1.0 CPython/3.12.3`

Release files / topoly-1.1.0-cp39-cp39-manylinux2014_x86_64.whl

Download URL	topoly-1.1.0-cp39-cp39-manylinux2014_x86_64.whl
Size	9.4 MB
Tags	CPython 3.9 Linux glibc 2.17+ x86-64
SHA-256 checksum How to use checksums	`5db04c076bb41559884ef2528d8ce46eec50fafec7e4d75ce3425a914fc3c0f0`
BLAKE2b-256 checksum How to use checksums	`3e80910c67adcd37c91a2e54d4466f5fcba4680d48f9b478e0ae843b6d168241`
Upload date	May 7, 2025
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/6.1.0 CPython/3.10.12`

Release files / topoly-1.1.0-cp39-cp39-macosx_12_0_arm64.whl

Download URL	topoly-1.1.0-cp39-cp39-macosx_12_0_arm64.whl
Size	5.9 MB
Tags	CPython 3.9 macOS 12.0+ ARM64
SHA-256 checksum How to use checksums	`9982cec3eda3f8fa1f79a7f3ff85489664fb0a5b1cea86a4f5fa42cbe3b91b84`
BLAKE2b-256 checksum How to use checksums	`b9c74f6f75b4aac8f63930c620ddc8c9b22d9dfe533cde1fd545e8da061188a7`
Upload date	May 11, 2025
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/6.1.0 CPython/3.13.3`

Release files / topoly-1.1.0-cp39-cp39-macosx_10_10_intel.whl

Download URL	topoly-1.1.0-cp39-cp39-macosx_10_10_intel.whl
Size	6.2 MB
Tags	CPython 3.9 macOS 10.10+ Intel (x86-64, i386)
SHA-256 checksum How to use checksums	`30fbd928da323b625baf32e99a2bd4cfad09d1ab3ced15baf7a2486e30592ccf`
BLAKE2b-256 checksum How to use checksums	`2f2c77de32c244973d7279fbae020635faaabe29416bdbfaeaa9204e03dcc250`
Upload date	May 8, 2025
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/4.0.0 CPython/3.10.12`

Release files / topoly-1.1.0-cp38-cp38-manylinux2014_x86_64.whl

Download URL	topoly-1.1.0-cp38-cp38-manylinux2014_x86_64.whl
Size	9.5 MB
Tags	CPython 3.8 Linux glibc 2.17+ x86-64
SHA-256 checksum How to use checksums	`98b34fea9ed751339619154d5c37e04dae97205bb499baa4c82a24859c21f60d`
BLAKE2b-256 checksum How to use checksums	`ebca6dbc68f2b87ace0215660dee5fe2d5913f61cd6af58a23903d4904889c7d`
Upload date	May 7, 2025
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/6.1.0 CPython/3.10.12`

Release files / topoly-1.1.0-cp38-cp38-macosx_10_10_intel.whl

Download URL	topoly-1.1.0-cp38-cp38-macosx_10_10_intel.whl
Size	6.2 MB
Tags	CPython 3.8 macOS 10.10+ Intel (x86-64, i386)
SHA-256 checksum How to use checksums	`01a5aec42a613a89a03782d1a3efeafa68ecc0e7cbb3792365caa319deaabd27`
BLAKE2b-256 checksum How to use checksums	`edb8c85234fcaf20695599c00f3746b0b78efa0ab1bd08a5b634423d5ed75afd`
Upload date	May 8, 2025
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/4.0.0 CPython/3.10.12`

Release files / topoly-1.1.0-cp37-cp37m-manylinux2014_x86_64.whl

Download URL	topoly-1.1.0-cp37-cp37m-manylinux2014_x86_64.whl
Size	9.5 MB
Tags	CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.17+ x86-64
SHA-256 checksum How to use checksums	`ea284991f3f7f48e76e1936265d98dc60c648b0b5e2652b67a6242fb3f114579`
BLAKE2b-256 checksum How to use checksums	`a223df99d650451bd2b1374f497ba10c50628072a02c61a525a75bd0534bbde6`
Upload date	May 7, 2025
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/6.1.0 CPython/3.10.12`

Release files / topoly-1.1.0-cp36-cp36m-manylinux2014_x86_64.whl

Download URL	topoly-1.1.0-cp36-cp36m-manylinux2014_x86_64.whl
Size	9.2 MB
Tags	CPython 3.6 CPython 3.6 pymalloc Linux glibc 2.17+ x86-64
SHA-256 checksum How to use checksums	`a5cb9b91bfe0879017af4b3ba1b729ded0ea3f82a30b058ce705cd97109ab9b4`
BLAKE2b-256 checksum How to use checksums	`5210436384531a6380dcb01143a89d81640c968cdf0e5a5e078ccd7d646d5087`
Upload date	May 7, 2025
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/6.1.0 CPython/3.10.12`

Release history Release notifications | RSS feed

This release

1.1.0 This release

May 7, 2025 29 release files

1.0.4

Feb 1, 2024 20 release files

1.0.3

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1.0.2

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1.0.1

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1.0.0

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0.9.26

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0.9.9

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Feb 3, 2020 8 release files

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0.2.2

Jan 21, 2020 4 release files

0.2.1

Nov 24, 2019 8 release files

0.2.0

Nov 23, 2019 8 release files

0.1.9

Nov 23, 2019 8 release files

0.1.8

Nov 22, 2019 8 release files

0.1.7

Nov 22, 2019 4 release files

0.1.4

Nov 20, 2019 4 release files

0.1.3

Nov 18, 2019 8 release files

0.1.2

Nov 5, 2019 7 release files

0.1.1

Oct 28, 2019 4 release files

0.1.0

Sep 16, 2019 6 release files

topoly 1.1.0

What you can do with Topoly?

Provided executable programs

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Release files for topoly 1.1.0

Files added late

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Release files / topoly-1.1.0-cp314-cp314-macosx_11_0_arm64.whl

File added late

Release files / topoly-1.1.0-cp313-cp313-win_amd64.whl

Release files / topoly-1.1.0-cp313-cp313-manylinux2014_x86_64.whl

Release files / topoly-1.1.0-cp313-cp313-macosx_12_0_arm64.whl

Release files / topoly-1.1.0-cp313-cp313-macosx_11_0_arm64.whl

File added late

Release files / topoly-1.1.0-cp313-cp313-macosx_10_13_intel.whl

Release files / topoly-1.1.0-cp312-cp312-win_amd64.whl

Release files / topoly-1.1.0-cp312-cp312-manylinux2014_x86_64.whl

Release files / topoly-1.1.0-cp312-cp312-macosx_12_0_arm64.whl

Release files / topoly-1.1.0-cp312-cp312-macosx_11_0_arm64.whl

File added late

Release files / topoly-1.1.0-cp312-cp312-macosx_10_13_intel.whl

Release files / topoly-1.1.0-cp311-cp311-win_amd64.whl

Release files / topoly-1.1.0-cp311-cp311-manylinux2014_x86_64.whl

Release files / topoly-1.1.0-cp311-cp311-macosx_12_0_arm64.whl

Release files / topoly-1.1.0-cp311-cp311-macosx_11_0_arm64.whl

File added late

Release files / topoly-1.1.0-cp311-cp311-macosx_10_13_intel.whl

Release files / topoly-1.1.0-cp310-cp310-win_amd64.whl

Release files / topoly-1.1.0-cp310-cp310-manylinux2014_x86_64.whl

Release files / topoly-1.1.0-cp310-cp310-macosx_12_0_arm64.whl

Release files / topoly-1.1.0-cp310-cp310-macosx_11_0_arm64.whl

File added late

Release files / topoly-1.1.0-cp310-cp310-macosx_10_10_intel.whl

Release files / topoly-1.1.0-cp39-cp39-win_amd64.whl

Release files / topoly-1.1.0-cp39-cp39-manylinux2014_x86_64.whl

Release files / topoly-1.1.0-cp39-cp39-macosx_12_0_arm64.whl

Release files / topoly-1.1.0-cp39-cp39-macosx_10_10_intel.whl

Release files / topoly-1.1.0-cp38-cp38-manylinux2014_x86_64.whl

Release files / topoly-1.1.0-cp38-cp38-macosx_10_10_intel.whl

Release files / topoly-1.1.0-cp37-cp37m-manylinux2014_x86_64.whl

Release files / topoly-1.1.0-cp36-cp36m-manylinux2014_x86_64.whl

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