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torch-motion-correction

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Movie motion estimation and correction using PyTorch. Implements a spline-based deformation field to model the beam-induced motion over movie collection.

Implemented algorithms

  • Cross-correlation-based global motion estimation (see estimate_global_motion in estimate_motion_xc.py)
  • Spline-based local motion estimation (see estimate_local_motion in estimate_motion_optimizer.py)
  • Motion correction of movie (not summation to final micrograph) using estimated deformation field (see correct_motion in correct_motion.py)

Authors

  • Alister Burt (started when working at MRC-LMB, continued at Genentech)
  • Josh Dickerson (UC Berkeley)
  • Matthew Giammar (UC Berkeley)

Metadata

Release files for torch-motion-correction 0.6.0rc2

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