Transport Analysis

Latest release
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Community

A Python package to compute and analyze transport properties.

Transport Analysis is bound by a Code of Conduct.

Installation

To build Transport Analysis from source, we highly recommend using virtual environments. If possible, we strongly recommend that you use Anaconda as your package manager. Below we provide instructions both for conda and for pip.

With conda

Ensure that you have conda installed.

Create a virtual environment and activate it:

conda create --name transport_analysis
conda activate transport_analysis

Install the development and documentation dependencies:

conda env update --name transport_analysis --file devtools/conda-envs/test_env.yaml
conda env update --name transport_analysis --file docs/requirements.yaml

Build this package from source:

pip install -e .

If you want to update your dependencies (which can be risky!), run:

conda update --all

And when you are finished, you can exit the virtual environment with:

conda deactivate

With pip

To build the package from source, run:

pip install -e .

If you want to create a development environment, install the dependencies required for tests and docs with:

pip install -e ".[test,doc]"

Copyright

The Transport Analysis source code is hosted at https://github.com/MDAnalysis/transport-analysis and is available under the GNU General Public License, version 2 (see the file LICENSE).

Copyright (c) 2023, Xu Hong Chen

Acknowledgements

Project based on the MDAnalysis Cookiecutter version 0.1. Please cite MDAnalysis when using Transport Analysis in published work.