tree_matching_distance
An implementation of the tree distance metric suggested by Lin, Rajan, and Moret, at ISBRA 2011.
Description
This package contains a function to import and provides a command-line tool that compares two given trees and return a distance between them.
Usage
Run the program like
tree_matching_distance t1.tree t2.tree
where the two file parameters contain trees in Newick format on the same taxa.
To use the distance method from within your own code, write
from ete3 import Tree
from tree_matching_distance import distance
t1 = Tree('((a, b), (c, d));')
t2 = Tree('((a, c), (b, d));')
d = distance(t1, t2)
print(d)
for a simple test. Note that this package requires ETE3 trees.
1 maintainer
Metadata
1 maintainer
Release files for tree-matching-distance 1.0.7
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| tree_matching_distance-1.0.7-py2.py3-none-any.whl | Python 2, Python 3 | none | any | Details |
Release files / tree_matching_distance-1.0.7-py2.py3-none-any.whl
| Download URL | tree_matching_distance-1.0.7-py2.py3-none-any.whl |
|---|---|
| Size | 4.0 kB |
| Tags | Python 2 Python 3 |
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