No project description provided

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for faridrashidi from gravatar.com faridrashidi

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD)
  • Author: Farid Rashidi
  • Maintainer: Farid Rashidi
  • Tags tumor phylogeny , single cell , scalable , rna-seq , dna-seq
  • Requires: Python >=3.6
Classifiers
Report project as malware

Project description

DOI Stars Compatible PyPI PyPiDownloads Contributions Welcome Build Status Docs Status Pre-commit Codecov License Code Style

Trisicell - Scalable intratumor heterogeneity inference and validation from single-cell data

overview

Trisicell (Triple-toolkit for single-cell intratumor heterogeneity inference), pronounced as “tricycle”, is a new computational toolkit for scalable intratumor heterogeneity inference and evaluation from single-cell RNA, as well as single-cell genome or exome, sequencing data. Trisicell utilizes expressed SNVs and Indels to infer evolutionary relationships between genomic alterations and the cells that harbor them.

Support

Feel free to submit an issue. Your help to improve Trisicell is highly appreciated.

Trisicell was developed in collaboration between the Cancer Data Science Laboratory (CDSL) and the Laboratory of Cancer Biology and Genetics (LCBG) at the National Cancer Institute (NCI).

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for faridrashidi from gravatar.com faridrashidi

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD)
  • Author: Farid Rashidi
  • Maintainer: Farid Rashidi
  • Tags tumor phylogeny , single cell , scalable , rna-seq , dna-seq
  • Requires: Python >=3.6
Classifiers

Release history Release notifications | RSS feed

This version

0.2.3

0.2.2

0.2.1

0.2.0

0.1.1

0.1.0

0.0.21

0.0.20

0.0.19

0.0.18

0.0.17

0.0.15

0.0.14

0.0.13

0.0.12

0.0.11

0.0.10

0.0.9

0.0.8

0.0.7

0.0.6

0.0.5

0.0.4

0.0.3

0.0.2

0.0.1

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

trisicell-0.2.3.tar.gz (21.8 MB view details)

Uploaded Source

Built Distributions

If you're not sure about the file name format, learn more about wheel file names.

trisicell-0.2.3-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (22.6 MB view details)

Uploaded PyPymanylinux: glibc 2.12+ x86-64

trisicell-0.2.3-pp37-pypy37_pp73-manylinux_2_12_i686.manylinux2010_i686.whl (22.7 MB view details)

Uploaded PyPymanylinux: glibc 2.12+ i686

trisicell-0.2.3-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (30.6 MB view details)

Uploaded CPython 3.9manylinux: glibc 2.12+ x86-64

trisicell-0.2.3-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (30.4 MB view details)

Uploaded CPython 3.9manylinux: glibc 2.12+ i686

trisicell-0.2.3-cp39-cp39-macosx_10_9_x86_64.whl (22.6 MB view details)

Uploaded CPython 3.9macOS 10.9+ x86-64

trisicell-0.2.3-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (30.6 MB view details)

Uploaded CPython 3.8manylinux: glibc 2.12+ x86-64

trisicell-0.2.3-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (30.4 MB view details)

Uploaded CPython 3.8manylinux: glibc 2.12+ i686

trisicell-0.2.3-cp38-cp38-macosx_10_9_x86_64.whl (22.6 MB view details)

Uploaded CPython 3.8macOS 10.9+ x86-64

trisicell-0.2.3-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (30.6 MB view details)

Uploaded CPython 3.7mmanylinux: glibc 2.12+ x86-64

trisicell-0.2.3-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (30.4 MB view details)

Uploaded CPython 3.7mmanylinux: glibc 2.12+ i686

trisicell-0.2.3-cp37-cp37m-macosx_10_9_x86_64.whl (22.6 MB view details)

Uploaded CPython 3.7mmacOS 10.9+ x86-64

trisicell-0.2.3-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (30.6 MB view details)

Uploaded CPython 3.6mmanylinux: glibc 2.12+ x86-64

trisicell-0.2.3-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (30.4 MB view details)

Uploaded CPython 3.6mmanylinux: glibc 2.12+ i686

trisicell-0.2.3-cp36-cp36m-macosx_10_9_x86_64.whl (22.6 MB view details)

Uploaded CPython 3.6mmacOS 10.9+ x86-64

File details

Details for the file trisicell-0.2.3.tar.gz.

File metadata

  • Download URL: trisicell-0.2.3.tar.gz
  • Upload date:
  • Size: 21.8 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.2 CPython/3.9.18

File hashes

Hashes for trisicell-0.2.3.tar.gz
Algorithm Hash digest
SHA256 a5ecb36aaabcac3234b0a2b8ab19d5b6a94e786660e855a5bd9a34553e22f3cd
MD5 b03c297a8c5696127d3e48b797e6782b
BLAKE2b-256 02bb9a7d54ba088771a7fd849b68126beb5b8c95a6812777f27acada198d7abb

See more details on using hashes here.

File details

Details for the file trisicell-0.2.3-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.

File metadata

File hashes

Hashes for trisicell-0.2.3-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Algorithm Hash digest
SHA256 f5b2b6c55bccb82822f3d4545c9ca002dd8d3e795740f85810a5b11311d97086
MD5 f98c0194b5b56a1f8951047f70e74a7a
BLAKE2b-256 c60985a11a73c41e1c14ff3571474d6cc21b8b98d16cfafdb46a3d529bb08580

See more details on using hashes here.

File details

Details for the file trisicell-0.2.3-pp37-pypy37_pp73-manylinux_2_12_i686.manylinux2010_i686.whl.

File metadata

File hashes

Hashes for trisicell-0.2.3-pp37-pypy37_pp73-manylinux_2_12_i686.manylinux2010_i686.whl
Algorithm Hash digest
SHA256 53156fb16977dd2209daa7e407bb62540108323f8f16a32d409112d5444c29be
MD5 64855f37ea4f82504f1d2aae62452ac1
BLAKE2b-256 cdba4d4da1dc00d7bb9211e7e9267b65237c21a512cbc39b3af72261c6a34534

See more details on using hashes here.

File details

Details for the file trisicell-0.2.3-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.

File metadata

File hashes

Hashes for trisicell-0.2.3-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Algorithm Hash digest
SHA256 8e2264fd4ec6471a7d87cd95c06fd9873ee1b6a36da50a40e6c7454f0da55586
MD5 b89749107bf6651d6373c7c1be19fa9f
BLAKE2b-256 b9ebf9f3db7393b917b4057f26810ddedb1f639e290f5e34e4cbf199d5595707

See more details on using hashes here.

File details

Details for the file trisicell-0.2.3-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl.

File metadata

File hashes

Hashes for trisicell-0.2.3-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl
Algorithm Hash digest
SHA256 c312523cfd972a73b2c2893233f71cddf806044d74d8979e8e97ba374895eb9b
MD5 bf4eb8b6c409da74490c218a092637d7
BLAKE2b-256 e28f21ff211778e70fdca3810d9de8de95e705ce53c91a9f4a190f94bdde848c

See more details on using hashes here.

File details

Details for the file trisicell-0.2.3-cp39-cp39-macosx_10_9_x86_64.whl.

File metadata

File hashes

Hashes for trisicell-0.2.3-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm Hash digest
SHA256 3aca6989cd9920618e00b826f3c7aa753288bde51c3289ebc1cb9b5451cd6e77
MD5 501049a9c874de90222b252e1b73c5fc
BLAKE2b-256 ad7cb57f7b242a926f9d3e0d5fae04a55cd9b0353cc9f48eec67e7f282c089fe

See more details on using hashes here.

File details

Details for the file trisicell-0.2.3-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.

File metadata

File hashes

Hashes for trisicell-0.2.3-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Algorithm Hash digest
SHA256 e5b071f6d07b7f110ec0c216b9ad05a3a78a700ec6ab541617f6ebfdf45f1bc6
MD5 f64504b9dd8a29efd9d2456b02c494dd
BLAKE2b-256 c3617ddb45c7d425ee9d87f923549e551cf87b27857489fbe8f11ad9aeaa2725

See more details on using hashes here.

File details

Details for the file trisicell-0.2.3-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl.

File metadata

File hashes

Hashes for trisicell-0.2.3-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl
Algorithm Hash digest
SHA256 409f3e3211cbc561b548b8004cbcfe84ad9a4efbf078c2a353790c6a7c9c349d
MD5 16685043d292ec4c65b53526925d1059
BLAKE2b-256 4e02de1d7611efdef64eb94be6a4b117373162eda875b8f59bc999be43a637fb

See more details on using hashes here.

File details

Details for the file trisicell-0.2.3-cp38-cp38-macosx_10_9_x86_64.whl.

File metadata

File hashes

Hashes for trisicell-0.2.3-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm Hash digest
SHA256 e5806a4ff0e14069686ebcd95605820049c096d92a6f63e3effd640c025d5e91
MD5 f7704bfb222f23e488033556eaa8a4cf
BLAKE2b-256 ec0a24074f85e5a41699e4d661264f13037753fc25862ce0b739fcbac753ff66

See more details on using hashes here.

File details

Details for the file trisicell-0.2.3-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.

File metadata

File hashes

Hashes for trisicell-0.2.3-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Algorithm Hash digest
SHA256 66e69fda598ef6f54aa2c0663d3ce724849b73341c906f12f2e290b9f440bdbc
MD5 cb8e533f506c49c420baf1fdd3cd339d
BLAKE2b-256 3be635b58ea06b2a93d6e94b678f6ef700c9b72618c86ec41aea736273c08f37

See more details on using hashes here.

File details

Details for the file trisicell-0.2.3-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl.

File metadata

File hashes

Hashes for trisicell-0.2.3-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl
Algorithm Hash digest
SHA256 536a28385cb130045738bf38d0a76841ee0f79d02507968ed74a7cf3289f6a8e
MD5 22995fc0b0059c1b921dc9e4284b8aaa
BLAKE2b-256 371d9bc80276f753bbeff4ebb10c9e4633425b1d7c1314783467100bcdac172a

See more details on using hashes here.

File details

Details for the file trisicell-0.2.3-cp37-cp37m-macosx_10_9_x86_64.whl.

File metadata

File hashes

Hashes for trisicell-0.2.3-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm Hash digest
SHA256 5c48bbb792cb08807b43c81acd8c92c24527f6f840c3a057814d54bb7c7b935d
MD5 d1fa03badb085553f0290fd2971705d5
BLAKE2b-256 f03441c5c6ae2df1bacaecd0b727ee5126c80ad51683d5c95185a12bd15430ab

See more details on using hashes here.

File details

Details for the file trisicell-0.2.3-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.

File metadata

File hashes

Hashes for trisicell-0.2.3-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
Algorithm Hash digest
SHA256 73efbba447179279c312c04b9ae923708b438710f8b43dc3882b3caa1b468be2
MD5 4b1f890d8eeaaaefcd21095c15e9e66a
BLAKE2b-256 212e8e3c9cb0542a17bdefa6d363b2179372f033fe77b1431e355f805836d268

See more details on using hashes here.

File details

Details for the file trisicell-0.2.3-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl.

File metadata

File hashes

Hashes for trisicell-0.2.3-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl
Algorithm Hash digest
SHA256 f5bd53cb68b52cd1a3fd8d347f9ae880c77de2c35a8fe2f35d3f99cd5f6f04ff
MD5 b7e8b39df5404a66994eef8cf45a21cf
BLAKE2b-256 b84cf1503fad1b5fb18a7b3966a84a10041b812a25b586d926027124cea3a8a1

See more details on using hashes here.

File details

Details for the file trisicell-0.2.3-cp36-cp36m-macosx_10_9_x86_64.whl.

File metadata

File hashes

Hashes for trisicell-0.2.3-cp36-cp36m-macosx_10_9_x86_64.whl
Algorithm Hash digest
SHA256 928ccc97566e45e520ef84cbc780a026ae9c2fae0bf5dabafd320eec11d4b3f0
MD5 e720e7699d348919955bbc09b11e7831
BLAKE2b-256 69da216f46c2c713b88c68eaffa53c19c17112d9eef1f6069e028084307d4caa

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page