trompy 0.16.5

A collection of tools for data analysis and plotting that originated in the McCutcheon Lab (UiT, Tromso)

trompy

A collection of tools for plotting and data analysis from McCutcheon Lab based at UiT in Tromsø, Norway (hence trom-py). We study ingestive behavior and motivation in rodent neuroscience experiments but code may be useful in other settings.

Highlights include:

• GUI for analyzing lick patterns in rodent feeding and drinking experiments [^1]
• GUI for analyzing fiber photometry data from rodent neuroscience experiments
• Function for plotting bar plots with individual data points
• Function for reading data files produced by Med Associates behavioral equipment
• Functions for analyzing patterns of licking in rodent experiments
• Functions for performing ROC (receiver-operator characteristic) analysis

[^1]: GUIs are now available as separate packages: https://github.com/mccutcheonlab/Lick-Calc-GUI and https://github.com/mccutcheonlab/photogui

Code is maintained by James McCutcheon, Dept of Psychology, UiT The Arctic University of Norway.

Installation

The simplest way to install is via the pip package manager. Briefly, from a terminal run

pip install trompy

Dependencies will be automatically downloaded but are also listed in environment

Previous versions

https://pypi.org/project/trompy/#history

How to cite this project?

Please email [e-mail] to get instructions on how to properly cite this project.

Contributing

You are welcome to contribute to the code via pull requests. Please have a look at the NLeSC guide for guidelines about software development.