Toolkit for genome-wide analysis of STRs

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  • License: MIT License (MIT)
  • Author: Melissa Gymrek
  • Requires: Python <4.0, >=3.7.1
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TRTools

TRTools includes a variety of utilities for filtering, quality control and analysis of tandem repeats downstream of genotyping them from next-generation sequencing. It supports multiple recent genotyping tools (see below).

See full documentation and examples at https://trtools.readthedocs.io

If you use TRTools in your work, please cite: Nima Mousavi, Jonathan Margoliash, Neha Pusarla, Shubham Saini, Richard Yanicky, Melissa Gymrek. (2020) TRTools: a toolkit for genome-wide analysis of tandem repeats. Bioinformatics. (https://doi.org/10.1093/bioinformatics/btaa736)

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  • License: MIT License (MIT)
  • Author: Melissa Gymrek
  • Requires: Python <4.0, >=3.7.1
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