Skip to main content

Tetra Data Domain-Specific Components Documentation

ts-ids-components is home to domain-specific common components for use in programmatic IDSs. For getting started with programmatic IDS or documentation about creating and using Tetra Data models, see ids.tetrascience.com.

These components can be used in any IDS as a way to build upon existing data models. When multiple IDSs use the same common components, accessing data becomes more consistent by enabling reuse of search queries and application code.

Version

v0.16.2

Install

pip install ts-ids-components

Quickstart

After installing this package, components can be imported and used in any programmatic IDS definition.

Here is an example of a complete IDS definition which uses the {py:class}Filter <ts_ids_components.plate_reader.Filter> component:

from typing import List

from ts_ids_core.schema import (
    IdsElement,
    IdsField,
    Required,
    SchemaExtraMetadataType,
    TetraDataSchema,
)

from ts_ids_components.plate_reader import Filter


class InstrumentMethod(IdsElement):
    """Methods defined for the instrument run"""

    protocol_id: str = IdsField(description="Identifier for the protocol used")
    filter: Filter


class MyPlateReaderModel(TetraDataSchema):
    """IDS demonstrating plate reader components"""

    schema_extra_metadata: SchemaExtraMetadataType = {
        "$id": "https://ids.tetrascience.com/common/plate-reader-component-demo/v1.0.0/schema.json",
        "$schema": "http://json-schema.org/draft-07/schema",
    }

    ids_type: Required[str] = IdsField(
        default="plate-reader-component-demo", alias="@idsType", const=True
    )
    ids_version: Required[str] = IdsField(
        default="v1.0.0", alias="@idsVersion", const=True
    )
    ids_namespace: Required[str] = IdsField(
        default="common", alias="@idsNamespace", const=True
    )

    methods: List[InstrumentMethod]

See {external+ts-ids-core:doc}ts-ids-core export-schema <cli/export_schema> documentation for an explanation of generating JSON Schema from a programmatic IDS.

Expand to show JSON schema for `MyPlateReaderModel`
{
  "description": "IDS demonstrating plate reader components",
  "type": "object",
  "properties": {
    "@idsType": {
      "const": "plate-reader-component-demo",
      "type": "string"
    },
    "@idsVersion": {
      "const": "v1.0.0",
      "type": "string"
    },
    "@idsNamespace": {
      "const": "common",
      "type": "string"
    },
    "@idsConventionVersion": {
      "description": "IDS convention version. Defined by TetraScience.",
      "const": "v1.0.0",
      "type": "string"
    },
    "methods": {
      "type": "array",
      "items": {
        "$ref": "#/definitions/InstrumentMethod"
      }
    }
  },
  "required": [
    "@idsType",
    "@idsVersion",
    "@idsNamespace",
    "@idsConventionVersion"
  ],
  "additionalProperties": false,
  "$id": "https://ids.tetrascience.com/common/plate-reader-component-demo/v1.0.0/schema.json",
  "$schema": "http://json-schema.org/draft-07/schema",
  "definitions": {
    "ValueUnit": {
      "type": "object",
      "properties": {
        "value": {
          "type": [
            "number",
            "null"
          ]
        },
        "unit": {
          "type": [
            "string",
            "null"
          ]
        }
      },
      "required": [
        "value",
        "unit"
      ],
      "additionalProperties": false
    },
    "Filter": {
      "description": "Optical filter properties",
      "type": "object",
      "properties": {
        "position": {
          "description": "Position of this filter in a container like a filter wheel",
          "type": [
            "string",
            "null"
          ]
        },
        "bandwidth": {
          "description": "The range of frequencies associated with this filter",
          "$ref": "#/definitions/ValueUnit"
        },
        "wavelength": {
          "description": "Characteristic wavelength of this filter",
          "$ref": "#/definitions/ValueUnit"
        }
      },
      "additionalProperties": false
    },
    "InstrumentMethod": {
      "description": "Methods defined for the instrument run",
      "type": "object",
      "properties": {
        "protocol_id": {
          "description": "Identifier for the protocol used",
          "type": "string"
        },
        "filter": {
          "$ref": "#/definitions/Filter"
        }
      },
      "additionalProperties": false
    }
  }
}

License

License information can be found here: LICENSE.

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ts_ids_components-0.16.2.tar.gz (42.2 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

ts_ids_components-0.16.2-py3-none-any.whl (54.7 kB view details)

Uploaded Python 3

File details

Details for the file ts_ids_components-0.16.2.tar.gz.

File metadata

  • Download URL: ts_ids_components-0.16.2.tar.gz
  • Upload date:
  • Size: 42.2 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.13.14

File hashes

Hashes for ts_ids_components-0.16.2.tar.gz
Algorithm Hash digest
SHA256 352a8949f3cbdd1e46b05a15c68d427eb83b83f87954ca9b54d83364a8b7591a
MD5 331cb5dd0b0ebf159915be0087fe3f6e
BLAKE2b-256 19a45410a920f81cacef1643e9b230890f6c194bddf90e6f2d9038c736321fb6

See more details on using hashes here.

File details

Details for the file ts_ids_components-0.16.2-py3-none-any.whl.

File metadata

File hashes

Hashes for ts_ids_components-0.16.2-py3-none-any.whl
Algorithm Hash digest
SHA256 fb2703679898424a64c3a19d8443f98fee2e02e259cc6690817609fc2a5d9b8f
MD5 cd65b1419bd0c81860ac5125daf6054e
BLAKE2b-256 96f24310d7ca7a42cd3f79bd4c9151495da2d9544ec14d7c1d61e30c9d867d2f

See more details on using hashes here.

Release history Release notifications | RSS feed

0.19.0

2 files

0.18.0

2 files

0.17.0

2 files

This release

0.16.2 This release

2 files

0.16.1

2 files

0.16.0

2 files

0.15.0

2 files

0.14.0

2 files

0.13.0

2 files

0.12.0

2 files

0.11.2

2 files

0.11.1

2 files

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page