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PCA-Matryoshka + TurboQuant compression for embeddings, LLM KV caches, pgvector, and NATS — up to 27x compression

Project description

TurboQuant Pro

PyPI version Tests License: MIT Python 3.9+

PCA-Matryoshka dimension reduction + TurboQuant scalar quantization for embedding compression, LLM KV caches, pgvector, and NATS transport.

Up to 27x compression with 0.979 cosine similarity. Works on consumer GPUs (Volta+) and CPU.

What's New in v0.3.0

  • PCA-Matryoshka (PCAMatryoshka): Training-free PCA rotation enables effective dimension truncation for non-Matryoshka embedding models (Bond, IEEE TAI 2026).
  • Combined pipeline (PCAMatryoshkaPipeline): PCA reduction + TurboQuant quantization in one call -- 27x compression on BGE-M3.
  • Incremental PCA (partial_fit): Update the PCA basis as new data arrives without storing the full dataset.
  • Serialization: Save/load fitted PCA models to .npz files.

Installation

pip install turboquant-pro

# With GPU support (CUDA 12.x)
pip install turboquant-pro[gpu]

# With pgvector support (PostgreSQL)
pip install turboquant-pro[pgvector]

# With NATS transport support
pip install turboquant-pro[nats]

# Everything
pip install turboquant-pro[all]

Quick Start

import numpy as np
from turboquant_pro import TurboQuantKV

tq = TurboQuantKV(head_dim=256, n_heads=16, bits=3, use_gpu=False)
compressed = tq.compress(kv_tensor, packed=True)   # 5.1x smaller
reconstructed = tq.decompress(compressed)           # cos_sim > 0.978

PCA-Matryoshka Compression (NEW in v0.3)

PCA-Matryoshka applies a PCA rotation to any non-Matryoshka embedding model's output, reordering dimensions by explained variance so that truncation becomes effective without retraining. Combined with TurboQuant quantization, this achieves up to 27x compression.

from turboquant_pro import PCAMatryoshka

# Fit PCA on a sample of embeddings (5-10K vectors is sufficient)
pca = PCAMatryoshka(input_dim=1024, output_dim=384)
result = pca.fit(sample_embeddings)
print(f"Variance explained: {result.total_variance_explained:.1%}")

# Create the full pipeline: PCA-384 + TurboQuant 3-bit
pipeline = pca.with_quantizer(bits=3)  # ~27x compression
print(pipeline)  # PCAMatryoshkaPipeline(1024 -> PCA-384 -> TQ3-bit, ~27.7x)

# Compress/decompress
compressed = pipeline.compress(embedding)      # 4096 bytes -> ~148 bytes
reconstructed = pipeline.decompress(compressed)  # cosine ~0.979

# Batch operations
compressed_batch = pipeline.compress_batch(embeddings_2d)
reconstructed_batch = pipeline.decompress_batch(compressed_batch)

# Measure quality
mean_cos, min_cos, std_cos = pipeline.batch_cosine_similarity(test_set)

# Save/load the fitted PCA model
pca.save("pca_bge_m3_384.npz")
pca_loaded = PCAMatryoshka.load("pca_bge_m3_384.npz")

# Incremental PCA updates (no need to store full dataset)
pca.partial_fit(new_embeddings)

PCA-Matryoshka + TurboQuant compression on BGE-M3 (1024-dim):

Configuration Ratio Cosine Sim Recall@10
PCA-512 + TQ3 20.9x 0.984 78.0%
PCA-384 + TQ3 27.7x 0.979 76.4%
PCA-256 + TQ3 41.0x 0.963 78.2%
PCA-128 + TQ3 78.8x 0.923 73.0%

Storage savings with PCA-Matryoshka (PCA-384 + TQ3, BGE-M3):

Dataset Vectors Float32 PCA+TQ3 Ratio Saved
RAG chunks 112K 437 MB 16 MB 27.3x 421 MB
Ethics chunks 2.4M 9,375 MB 343 MB 27.3x 9,032 MB

How It Works

TurboQuant Pro implements the PolarQuant + QJL algorithm from Zandieh et al. (ICLR 2026) for compressing the key-value cache in transformer inference:

                    KV Tensor (B, H, S, D)
                           |
                    [L2 Norm Extract]
                           |
                    [Unit Normalize]
                           |
                   [Random Rotation Pi]        <-- QR of Gaussian matrix
                           |
                [Lloyd-Max Scalar Quantize]    <-- b-bit per coordinate
                           |
                     [Bit-Pack Indices]        <-- 8x3-bit = 3 bytes
                           |
              CompressedKV {indices, norms, bits}
                           |
                     [Unpack + Lookup]
                           |
                   [Inverse Rotation]
                           |
                    [Scale by Norms]
                           |
                Reconstructed KV Tensor

Key idea: A random orthogonal rotation maps head-dimension vectors onto the unit hypersphere, making coordinates approximately i.i.d. Gaussian. This enables efficient scalar quantization with precomputed Lloyd-Max codebooks.

Benchmark Results

Compression quality and ratios on random Gaussian KV tensors (head_dim=256, n_heads=16, fp16 baseline):

Bits Compression Ratio Cosine Similarity MSE
2 7.5x 0.926 0.001178
3 5.1x 0.978 0.000349
4 3.9x 0.995 0.000082

Memory estimates for popular models at 8K context (3-bit, packed):

Model Original Compressed Saved Ratio
Llama 3.1 8B 0.500 GB 0.098 GB 0.402 GB 5.1x
Llama 3.1 70B 1.250 GB 0.244 GB 1.006 GB 5.1x
Gemma 4 27B 1.125 GB 0.220 GB 0.905 GB 5.1x
Mistral 7B 2.000 GB 0.391 GB 1.609 GB 5.1x

Streaming Cache

TurboQuant Pro includes a streaming tiered cache for autoregressive generation:

  • L1 (hot window): Recent tokens stored uncompressed for zero-latency attention
  • L2 (cold storage): Older tokens bit-packed at b-bit precision (~5x compression)
from turboquant_pro import TurboQuantKVCache

cache = TurboQuantKVCache(head_dim=256, n_heads=16, bits=3, hot_window=512)

for token in tokens:
    k, v = model.forward_one(token)
    cache.append(k, v)                          # auto-compresses old entries
    keys = cache.get_keys(0, cache.length)       # seamless hot+cold retrieval
    values = cache.get_values(0, cache.length)

pgvector Embedding Compression

TurboQuant Pro can compress high-dimensional embeddings stored in PostgreSQL pgvector, reducing storage by 10x (from float32) or 5x (from float16):

from turboquant_pro import TurboQuantPGVector

tq = TurboQuantPGVector(dim=1024, bits=3, seed=42)

# Compress a single embedding (4096 bytes -> 388 bytes)
compressed = tq.compress_embedding(embedding_float32)

# Store as bytea in PostgreSQL
bytea_data = compressed.to_pgbytea()

# Batch compress for bulk operations
compressed_batch = tq.compress_batch(embeddings_array)

# Search compressed embeddings
scores = tq.compressed_cosine_similarity(query, compressed_batch)

# PostgreSQL integration
tq.create_compressed_table(conn, "embeddings_compressed")
tq.insert_compressed(conn, "embeddings_compressed", ids, embeddings)
results = tq.search_compressed(conn, "embeddings_compressed", query, top_k=10)

Storage savings for real workloads (1024-dim BGE-M3, 3-bit):

Dataset Vectors Float32 Compressed Ratio Saved
RAG chunks 112K 437 MB 41 MB 10.5x 396 MB
Ethics chunks 2.4M 9,375 MB 893 MB 10.5x 8,482 MB
Publications 824K 3,222 MB 307 MB 10.5x 2,915 MB

NATS Transport Codec

Compress embeddings for transmission over NATS JetStream or any message bus:

from turboquant_pro import TurboQuantNATSCodec

codec = TurboQuantNATSCodec(dim=1024, bits=3, seed=42)

# Encode for transport (4096 bytes -> 392 bytes)
payload = codec.encode(embedding_float32)

# Decode on the receiving end
embedding_approx = codec.decode(payload)

# Batch operations
payloads = codec.encode_batch(embeddings_2d)
embeddings = codec.decode_batch(payloads)

# Check compression stats
print(codec.stats())
# {'dim': 1024, 'bits': 3, 'payload_bytes': 392,
#  'float32_bytes': 4096, 'compression_ratio': 10.45, ...}

Components

Class Purpose
PCAMatryoshka PCA rotation + truncation for dimension reduction
PCAMatryoshkaPipeline Combined PCA + TurboQuant end-to-end pipeline
TurboQuantKV Stateless compress/decompress with optional bit-packing
TurboQuantKVCache Streaming L1/L2 tiered cache for autoregressive inference
CompressedKV Container dataclass for compressed tensors
TurboQuantPGVector Compress pgvector embeddings for PostgreSQL storage
CompressedEmbedding Container for a single compressed embedding
PCACompressedEmbedding Container for PCA-reduced + quantized embedding
TurboQuantNATSCodec Encode/decode embeddings for NATS transport

Integration Options

llama.cpp / llama-cpp-python

See examples/llama_integration.py for a wrapper pattern that intercepts KV tensors and stores them in a TurboQuantKVCache.

vLLM

TurboQuant Pro can be integrated into vLLM's PagedAttention by compressing cold KV pages:

# Conceptual: compress a page of KV cache
tq = TurboQuantKV(head_dim=128, n_heads=8, bits=3)
compressed_page = tq.compress(kv_page, packed=True)
# Store compressed_page instead of raw fp16

HuggingFace Transformers

Wrap the KV cache in generate() by subclassing the model's attention:

# Override the cache update in the attention layer
compressed_k = tq.compress(key_states, packed=True)
compressed_v = tq.compress(value_states, packed=True)
# Decompress when computing attention scores

GPU Acceleration

When CuPy is available, TurboQuant Pro uses CUDA RawKernels for bit-packing operations. All kernels are Volta-compatible (compute capability 7.0+).

tq = TurboQuantKV(head_dim=256, n_heads=16, bits=3, use_gpu=True)
# Automatically uses CuPy for rotation, quantization, and bit-packing

Falls back to NumPy automatically when CuPy is not installed.

Citation

If you use TurboQuant Pro in your research, please cite both this implementation and the original algorithm:

@software{bond2026turboquantpro,
  title={TurboQuant Pro: PCA-Matryoshka + TurboQuant Compression for Embeddings and LLM KV Caches},
  author={Bond, Andrew H.},
  year={2026},
  url={https://github.com/ahb-sjsu/turboquant-pro},
  license={MIT}
}

@article{bond2026pcamatryoshka,
  title={PCA-Matryoshka: Enabling Effective Dimension Reduction for Non-Matryoshka Embedding Models with Applications to Vector Database Compression},
  author={Bond, Andrew H.},
  journal={IEEE Transactions on Artificial Intelligence},
  year={2026}
}

@inproceedings{zandieh2026sublinear,
  title={Sub-linear Memory Inference via PolarQuant and QJL},
  author={Zandieh, Amir and Han, Insu and Daliri, Majid and Karbasi, Amin},
  booktitle={International Conference on Learning Representations (ICLR)},
  year={2026}
}

Acknowledgments

  • Algorithm: Zandieh, Han, Daliri, and Karbasi -- "Sub-linear Memory Inference via PolarQuant and QJL" (ICLR 2026)
  • Origin: Adapted from the Theory Radar project's TurboBeam beam-search compression, which first implemented PolarQuant+QJL in Python
  • Author: Andrew H. Bond, San Jose State University

License

MIT License. See LICENSE for details.

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