Phase Plane Widget

Interactive phase plane widget for neural mass models, usable in Jupyter notebooks, VS Code, and static HTML exports.

📖 Full Documentation & Live Demos

🧪 Try the Custom Model Editor → — pre-loaded with the MPR (QIF) model; tweak equations and watch the phase plane update in real time.

Features

• Interactive phase plane visualization with nullclines, vector field, fixed points, and trajectories
• N-dimensional state space — project any 2 variables, clamp the rest with live sliders
• Click-to-set initial conditions directly on the phase plane
• Real-time time series display of all state variables
• Stochastic integration — Stratonovich Heun with per-variable noise strength sliders
• Parameter sweeps with bifurcation diagram visualization
• Regime detection — automatically classifies dynamics as fixed point, limit cycle, or other
• Custom models — define arbitrary ODEs in Python (SymPy), compile to JavaScript via inlined Nerdamer CAS
• Standalone HTML — fully self-contained exports (no server, no kernel)

Installation

# Using uv
uv venv
uv pip install -e .

# Or using pip
pip install -e .

For development with Jupyter:

uv pip install -e ".[dev]"

Quick Start

Jupyter / VS Code — Built-in Models

from tvb_phaseplane import PhasePlaneWidget

widget = PhasePlaneWidget()
widget  # display interactive widget

Custom Model

from tvb_phaseplane import phase_plane

# Define any ODE system
pp = phase_plane(
    equations=["a*x - x**3 - y", "x - b*y"],
    state_vars={"x": (-3, 3), "y": (-3, 3)},
    params={"a": (0.7, 0, 2), "b": (0.8, 0, 2)},
)
pp  # Nerdamer-compiled, runs entirely in the browser

3-D Projection

pp = phase_plane(
    equations=["a*x - x**3 - y", "x - b*y", "c*(x - z)"],
    state_vars={"x": (-3, 3), "y": (-3, 3), "z": (0, 5)},
    params={"a": (0.7, 0, 2), "b": (0.8, 0, 2), "c": (10, 0, 20)},
    display=["x", "y"],  # project onto x-y plane
)

Stochastic Dynamics

pp = phase_plane(
    equations=["a*x - x**3 - y", "x - b*y"],
    state_vars={"x": (-3, 3), "y": (-3, 3)},
    params={"a": (0.7, 0, 2), "b": (0.8, 0, 2)},
    integrator="heun",
    noise_per_var=[0.1, 0.05],
)

Standalone HTML Export

from tvb_phaseplane import PhasePlaneWidget

widget = PhasePlaneWidget()
widget.to_standalone_html("widget.html", title="My Model")

The resulting .html file is fully self-contained — it bundles the Nerdamer CAS, all built-in models, the computation engine, CSS, and current widget state. Works in any modern browser with no Python runtime and no Jupyter kernel.

Built-in Models

Architecture

• Client-side computation — All ODE solving, fixed-point finding, and rendering runs in JavaScript (no server round-trips)
• Nerdamer CAS inlined — ~100 KB minified core bundled into widget.js; custom SymPy models compile directly to JS
• Dual-mode — Jupyter widget (anywidget) + fully self-contained HTML (to_standalone_html())
• Safety guards — NaN/Inf short-circuit, 50K step budget, exp clamping ([-709, 709]), computation budgets on nullclines and fixed-point search

Documentation

• Live demos — Embedded standalone widgets
• Deployment guide — Jupyter, VS Code, standalone HTML, mkdocs
• Model reference — Equations, parameters, dynamics
• API reference — Auto-generated from docstrings