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MCP configuration compiler for multiple AI agents

Project description

twmcp

One canonical TOML config for all your MCP servers. Compiled to agent-specific JSON.

The Problem

AI coding agents (GitHub Copilot CLI, IntelliJ Copilot, Claude Desktop) each need MCP server configurations in their own format — different JSON keys, different type names, different header structures, different file locations. Maintaining these configs separately means:

  • Duplicate definitions across 3+ JSON files
  • Secrets scattered in multiple locations
  • Agent-specific quirks handled manually (e.g., Claude Desktop silently ignores HTTP servers)
  • Adding a server means editing every agent config

The Solution

Define your MCP servers once in TOML. twmcp compiles agent-specific JSON to each agent's expected location, handling type mappings, header formats, server compatibility, and secret injection.

config.toml ──→ twmcp compile ──→ ~/.copilot/mcp-config.json            (Copilot CLI)
                                  ~/.config/github-copilot/.../mcp.json  (IntelliJ)
                                  ~/Library/.../claude_desktop_config.json(Claude Desktop)

Installation

Requires Python 3.13+.

pip install twmcp
# or
uv pip install twmcp

Quick Start

1. Create a canonical config

mkdir -p ~/.config/twmcp

~/.config/twmcp/config.toml:

env_file = "secrets.env"   # relative to config directory

[servers.github]
command = "npx"
args = ["-y", "@modelcontextprotocol/server-github"]
type = "stdio"

[servers.github.env]
GITHUB_TOKEN = "${GITHUB_TOKEN}"

[servers.github.overrides.copilot-cli]
type = "local"             # Copilot CLI calls stdio servers "local"

[servers.atlassian]
type = "http"
url = "https://mycompany.atlassian.net/mcp/"
tools = ["*"]

[servers.atlassian.headers]
Authorization = "Bearer ${CONFLUENCE_TOKEN}"

[servers.local-proxy]
command = "mcp-proxy"
args = ["http://localhost:8113/sse"]
type = "stdio"

[servers.local-proxy.env]
API_TOKEN = "${API_TOKEN:-default-token}"

2. Add your secrets

~/.config/twmcp/secrets.env:

GITHUB_TOKEN=ghp_abc123
CONFLUENCE_TOKEN=my-confluence-token

Environment variables override dotenv values.

3. Compile

# Compile for a single agent
twmcp compile copilot-cli

# Compile for all agents
twmcp compile --all

# Preview without writing files
twmcp compile copilot-cli --dry-run

# Select specific servers interactively
twmcp compile copilot-cli --select

# Filter servers non-interactively
twmcp compile --all --select github,local-proxy

What Gets Generated

From the config above, each agent receives a tailored JSON file:

Copilot CLI (~/.copilot/mcp-config.json)

{
  "mcpServers": {
    "github": {
      "type": "local",
      "command": "npx",
      "args": ["-y", "@modelcontextprotocol/server-github"],
      "env": { "GITHUB_TOKEN": "ghp_abc123" }
    },
    "atlassian": {
      "type": "http",
      "url": "https://mycompany.atlassian.net/mcp/",
      "headers": { "Authorization": "Bearer my-confluence-token" },
      "tools": ["*"]
    },
    "local-proxy": {
      "type": "local",
      "command": "mcp-proxy",
      "args": ["http://localhost:8113/sse"],
      "env": { "API_TOKEN": "default-token" }
    }
  }
}

IntelliJ (~/.config/github-copilot/intellij/mcp.json)

{
  "servers": {
    "github": {
      "type": "stdio",
      "command": "npx",
      "args": ["-y", "@modelcontextprotocol/server-github"],
      "env": { "GITHUB_TOKEN": "ghp_abc123" }
    },
    "atlassian": {
      "type": "http",
      "url": "https://mycompany.atlassian.net/mcp/",
      "requestInit": {
        "headers": { "Authorization": "Bearer my-confluence-token" }
      },
      "tools": ["*"]
    }
  }
}

Claude Desktop (~/Library/Application Support/Claude/claude_desktop_config.json)

{
  "mcpServers": {
    "github": {
      "command": "npx",
      "args": ["-y", "@modelcontextprotocol/server-github"],
      "env": { "GITHUB_TOKEN": "ghp_abc123" }
    },
    "local-proxy": {
      "command": "mcp-proxy",
      "args": ["http://localhost:8113/sse"],
      "env": { "API_TOKEN": "default-token" }
    }
  }
}

Claude Desktop only supports stdio servers — HTTP servers like atlassian are automatically skipped. The type field is also omitted since Claude Desktop doesn't use it.

Agent Differences

Aspect Copilot CLI IntelliJ Claude Desktop
Top-level key mcpServers servers mcpServers
Type mapping stdiolocal (none) (none)
Headers flat nested in requestInit n/a
HTTP servers supported supported skipped
type field included included omitted

Config Reference

Top-level

Key Type Required Description
env_file string no Path to dotenv file (relative to config)

Server Definition ([servers.<name>])

Key Type Required Description
type string yes stdio, http, or sse
command string for stdio Executable command
args string[] no Command arguments
url string for http/sse Server URL
env table no Environment variables
headers table no HTTP headers
tools string[] no Tool filter
overrides table no Agent-specific field overrides

Variable Interpolation

Values support ${VAR} and ${VAR:-default} syntax:

${GITHUB_TOKEN}              # resolved from env or dotenv — error if missing
${API_TOKEN:-default-token}  # uses default if not found anywhere

Resolution priority: environment variable > dotenv file > default value.

All unresolved variables (no value, no default) are reported together in a single error message.

Agent-Specific Overrides ([servers.<name>.overrides.<agent>])

Override any server field for a specific agent. Only non-null fields are applied:

[servers.github.overrides.copilot-cli]
type = "local"    # override type for copilot-cli only

CLI Reference

twmcp compile <agent>               # compile for one agent
twmcp compile --all                 # compile for all agents
twmcp compile <agent> --dry-run     # preview JSON output
twmcp compile <agent> --select      # interactive server picker
twmcp compile <agent> --select a,b  # filter to named servers
twmcp compile --all --select a,b    # filter applied to all agents
twmcp compile <agent> --config PATH # use custom config path

twmcp agents                        # list supported agents
twmcp agents --json                 # list as JSON

--select Flag

The --select flag operates in two modes:

  • Bare (--select): Opens an interactive terminal prompt where you toggle servers with Space and confirm with Enter. All servers are pre-selected (opt-out model).
  • With value (--select github,local-proxy): Filters to the named servers without any interactive prompt. Unknown names produce an error listing available servers.

When used with --all, the selection is applied once and used for all agent compilations.

Architecture

config.toml + secrets.env
        │
        ▼
┌─────────────────┐     ┌──────────────────┐
│ config.py       │────▶│ interpolate.py   │
│ TOML parsing    │     │ ${VAR} resolver  │
│ dataclasses     │     │ dotenv loader    │
└────────┬────────┘     └──────────────────┘
         │
         ▼
┌─────────────────┐     ┌──────────────────┐
│ cli.py          │────▶│ selector.py      │
│ compile command │     │ --select logic   │
│ agents command  │     │ interactive menu │
└────────┬────────┘     └──────────────────┘
         │
         ▼
┌─────────────────┐     ┌──────────────────┐
│ compiler.py     │────▶│ agents.py        │
│ transform logic │     │ profile registry │
│ JSON writer     │     │ per-agent config │
└─────────────────┘     └──────────────────┘

The transformation pipeline per server:

  1. Apply agent-specific overrides (merge PartialServer onto Server)
  2. Map type names (stdiolocal for Copilot CLI)
  3. Skip incompatible servers (HTTP on Claude Desktop)
  4. Format headers per agent style (flat / nested in requestInit)
  5. Omit empty fields and agent-irrelevant fields
  6. Wrap in agent's top-level key and write JSON

Development

make test       # run tests with coverage
make format     # ruff formatting
make lint       # ruff check --fix
make build      # format + build

Typer/Click Monkey-Patching

  • Typer recreates Click commands on every get_command() call - one-time patches get lost
  • typer.testing.CliRunner imports get_command at module level as _get_command - patching typer.main.get_command alone doesn't affect tests
  • Must patch BOTH typer.main.get_command AND typer.testing._get_command
  • Use from typer import testing as _tt (not import typer.testing) inside functions to avoid Python scoping issues with the typer name

Architecture

  • selector.py - server selection utilities (parse, validate, interactive prompt)
  • cli.py - typer app with compile and agents commands
  • _resolve_selection() in cli.py handles both interactive and non-interactive --select
  • Click _flag_needs_value patch enables dual-mode --select (bare=interactive, with value=filter)

License

BSD-3-Clause

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