twogroups-heatmap 0.1.3

Create a heatmap of representing intersection between two groups

Two groups heatmap

Generate an heatmap comparing overlaps between 2 set of labels in a pandas dataframe. This is useful in single-cell to compare the overlap between two clustering methods or 2 sets of cell type labels.

Installation

pip install twogroups-heatmap

Usage

from twogroups_heatmap import intersection_heatmap
import pandas as pd

df = pd.DataFrame(
    {
        "cluster1": ["A", "A", "B", "B", "C", "C"],
        "cluster2": ["A", "B", "B", "C", "C", "D"],
    }
)

intersection_heatmap(df, xcol="cluster1", ycol="cluster2")