CLI tool to link variants to methylation changes from nanopore data
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Unduliner is a Python command-line tool for predicting whether genomic variants are associated with local DNA methylation changes using nanopore long-read sequencing data.
It integrates MM/ML-tagged BAM files, VCFs, and a pre-trained deep learning model to evaluate methylation differences around SNVs and structural variants.
Usage details and test data are available on the Github page
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