uniprot-cli - An Unofficial client for Uniprot
uniprot-cli is an Unofficial client for the Uniprot protein database
written in python.
This project is still in its early stages under heavy development.
Do not expect this to work properly until v1.0.0.
Installation
Installation is done with pip:
pip install uniprot-cli
Usage
uniprot-cli has two modes of usage, an interactive-mode and a cli-mode.
The interactive-mode can be invoked by simply running:
uniprot-cli
And the user will be prompted for relevant input, step by step.
The cli-mode is used by passing arguments to uniprot-cli in the terminal:
Example:
uniprot-cli -q B5ZC00
This will cause uniprot-cli to skip interactive prompts and query Uniprot directly.
Arguments
The following arguments can be passed to uniprot-cli in cli-mode:
| Argument | Type | Default | Explaination |
|---|---|---|---|
-q, --query |
str |
None |
Query string. |
-m, --multiple |
bool |
False |
Query multiple results. |
-f, --format |
str |
'fasta' |
Data format for query result. |
-d, --dataset |
str |
'uniprotkb' |
Data set on Uniprot. |
-n, --nosave |
bool |
False |
Don't save the result. |
-v, --version |
N/A | N/A | Print version. |
-h, --help |
N/A | N/A | Print help and usage information. |
1 maintainer
Release files for uniprot-cli 0.3.4
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| uniprot_cli-0.3.4.tar.gz | 5.9 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| uniprot_cli-0.3.4-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 12.8 kB
Release files / uniprot_cli-0.3.4.tar.gz
| Download URL | uniprot_cli-0.3.4.tar.gz |
|---|---|
| Size | 5.9 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Release files / uniprot_cli-0.3.4-py3-none-any.whl
| Download URL | uniprot_cli-0.3.4-py3-none-any.whl |
|---|---|
| Size | 6.9 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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