uniprot-cli 0.3.4

An unofficial client for uniprot.

uniprot-cli - An Unofficial client for Uniprot

uniprot-cli is an Unofficial client for the Uniprot protein database written in python.

This project is still in its early stages under heavy development. Do not expect this to work properly until v1.0.0.

Installation

Installation is done with pip:

pip install uniprot-cli

Usage

uniprot-cli has two modes of usage, an interactive-mode and a cli-mode. The interactive-mode can be invoked by simply running:

uniprot-cli

And the user will be prompted for relevant input, step by step.

The cli-mode is used by passing arguments to uniprot-cli in the terminal:

Example:

uniprot-cli -q B5ZC00

This will cause uniprot-cli to skip interactive prompts and query Uniprot directly.

Arguments

The following arguments can be passed to uniprot-cli in cli-mode:

Argument	Type	Default	Explaination
-q, --query	str	None	Query string.
-m, --multiple	bool	False	Query multiple results.
-f, --format	str	'fasta'	Data format for query result.
-d, --dataset	str	'uniprotkb'	Data set on Uniprot.
-n, --nosave	bool	False	Don't save the result.
-v, --version	N/A	N/A	Print version.
-h, --help	N/A	N/A	Print help and usage information.